Merge pull request #347 from cidgoh/monkeypox-3.3.1

Monkeypox 3.3.1
cidgoh · Aug 4, 2022 · 85f2293 · 85f2293
2 parents 1abf545 + 4404909
commit 85f2293
Show file tree

Hide file tree

Showing 8 changed files with 586 additions and 412 deletions.
diff --git a/lib/DataHarmonizer.js b/lib/DataHarmonizer.js
@@ -1528,12 +1528,14 @@ class DataHarmonizer {
    * @param {String} prefix of export format to access in .exportField dictionary.
    */
   getTransformedField(headerName, value, field, prefix) {
+    const self = this;
     if (field.sources) {
       // iterate thru and will return the first match found in field.sources
       for (const source_index in field.sources) {
         const term =
-          DataHarmonizer.schema.enums[field.sources[source_index]]
-            .permissible_values[value];
+          self.schema.enums[field.sources[source_index]].permissible_values[
+            value
+          ];
         // Looking for term.exportField['GRDI'] for example:
         if (term && term.exportField && prefix in term.exportField) {
           // Here mapping involves a value substitution

diff --git a/web/templates/menu.json b/web/templates/menu.json
@@ -46,4 +46,4 @@
       "display": true
     }
   }
-}
+}
diff --git a/web/templates/monkeypox/export.js b/web/templates/monkeypox/export.js
@@ -263,7 +263,7 @@ export default {
 
         ['PH_SEQUENCING_CENTRE', []],
 
-        ['PH_SEQUENCING_SUBMITTER', []],
+        ['PH_SEQUENCE_SUBMITTER', []],
 
         ['HC_COLLECT_DATE', []],
         ['HC_TEXT2', []],
-Original file line number
+Diff line change
@@ Expand Up / @@ -46,4 +46,4 @@ @@
           "display": true
         }
       }
-    }
+    }