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20 Open 16 Closed
20 Open 16 Closed
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Issues list

Allow specifying a layer for differential expression testing
#58 opened Jan 24, 2024 by janschleicher
Fixed semi-automatic selection for n_comps in PCA bug Something isn't working enhancement New feature or request
#55 opened Dec 8, 2023 by mbruhns
@Baschdl @mbruhns @janschleicher
Reduce size of test data
#54 opened Dec 7, 2023 by Baschdl
ddqc thresholding bug Something isn't working
#51 opened Dec 5, 2023 by mbruhns
@mbruhns
More tests needed
#50 opened Dec 5, 2023 by janschleicher
3 tasks
@janschleicher
Find a better way to store config parameter values in adata.uns if apply==None
#48 opened Dec 1, 2023 by janschleicher
Switch to ruff CI Any issues regarding the CI pipeline.
#45 opened Dec 1, 2023 by mbruhns
Test validity of config file
#36 opened Dec 1, 2023 by Baschdl
1
Stable clustering alternative enhancement New feature or request
#34 opened Nov 30, 2023 by mbruhns
1
Consider the feasibility of hierarchical clustering research
#25 opened Nov 30, 2023 by mbruhns
Parameter selection for Leiden clustering enhancement New feature or request
#23 opened Nov 30, 2023 by mbruhns
Explore elbow estimation techniques as detailed in relevant literature research
#22 opened Nov 30, 2023 by mbruhns
Selection of number of PCs enhancement New feature or request
#21 opened Nov 30, 2023 by mbruhns
Log of anomalous values enhancement New feature or request
#17 opened Nov 30, 2023 by mbruhns
Implement UMAP plotting following pre-processing enhancement New feature or request
#15 opened Nov 30, 2023 by mbruhns
1
@Baschdl
Integrate into nf-core pipeline enhancement New feature or request
#13 opened Oct 22, 2023 by mbruhns
@mbruhns
Add correction of ambient RNA enhancement New feature or request
#12 opened Oct 21, 2023 by mbruhns
@mbruhns
Download 3kPBMC data set in Github action CI Any issues regarding the CI pipeline.
#9 opened Mar 22, 2023 by mbruhns
Working example
#8 opened Mar 20, 2023 by Baschdl
Relaxation of package requirements help wanted Extra attention is needed question Further information is requested
#7 opened Mar 19, 2023 by mbruhns
@Baschdl @aron0093 @janschleicher
4
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