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added seed_distance to parameters of mitochondria segmentation #93

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merged 4 commits into from
Jan 9, 2025

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lufre1
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@lufre1 lufre1 commented Jan 8, 2025

@@ -65,6 +65,7 @@ def segment_mitochondria(
return_predictions: bool = False,
scale: Optional[List[float]] = None,
mask: Optional[np.ndarray] = None,
seed_distance: int = 6,
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You should add this to the doc string as well.

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i added watershed tiling to the function's parameters, because i needed to adapt it for some data

@constantinpape constantinpape merged commit 07b4e7e into main Jan 9, 2025
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@constantinpape constantinpape deleted the add-seed-distance-to-mito-seg branch January 9, 2025 19:29
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2 participants