minor update

change to fasta gene and transcript ID extraction
cschlaffner · Jan 16, 2020 · b051e68 · b051e68
1 parent fd39823
commit b051e68
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/PoGo/src/Globals.cpp b/PoGo/src/Globals.cpp
@@ -9,6 +9,6 @@ bool GENOME_MAPPER_GLOBALS::PEPTIDE_MAPPER::CHR_FROM_GENOME_FASTA(false);
 std::string GENOME_MAPPER_GLOBALS::ID::GTF_GENE_ID("gene_id \"");
 std::string GENOME_MAPPER_GLOBALS::ID::GTF_TRANSCRIPT_ID("transcript_id \"");
 std::string GENOME_MAPPER_GLOBALS::ID::GTF_EXON_ID("exon_id \"");
-std::string GENOME_MAPPER_GLOBALS::ID::FASTA_GENE_ID("gene:");
-std::string GENOME_MAPPER_GLOBALS::ID::FASTA_TRANSCRIPT_ID("transcript:");
+std::string GENOME_MAPPER_GLOBALS::ID::FASTA_GENE_ID("gene");
+std::string GENOME_MAPPER_GLOBALS::ID::FASTA_TRANSCRIPT_ID("transcript");
 bool GENOME_MAPPER_GLOBALS::ID::ID_VERSION_INCLUDE(false);
diff --git a/PoGo/src/ProteinEntry.cpp b/PoGo/src/ProteinEntry.cpp
@@ -31,7 +31,7 @@ std::string ProteinEntry::extract_transcript_id_fasta(std::string str, bool vers
 	size_t index = str.find(GENOME_MAPPER_GLOBALS::ID::FASTA_TRANSCRIPT_ID);
 	std::string value("");
 	if (index != std::string::npos) {
-		index = index + GENOME_MAPPER_GLOBALS::ID::FASTA_TRANSCRIPT_ID.length();
+		index = index + GENOME_MAPPER_GLOBALS::ID::FASTA_TRANSCRIPT_ID.length() + 1;
 	} else {
 		index = 1;
 	}
@@ -48,7 +48,7 @@ std::string ProteinEntry::extract_gene_id_fasta(std::string str, bool versioninc
 	size_t index = str.find(GENOME_MAPPER_GLOBALS::ID::FASTA_GENE_ID);
 	std::string value("");
 	if (index != std::string::npos) {
-		index = index + GENOME_MAPPER_GLOBALS::ID::FASTA_GENE_ID.length();
+		index = index + GENOME_MAPPER_GLOBALS::ID::FASTA_GENE_ID.length() + 1;
 	} else {
 		index = str.find_first_of("|");
 		index = index + 1;