Add new content to documentation

- Adds TMAP8 content (requires a forthcoming adjustment to TMAP8 documentation to build successfully)
- Adds Cardinal content
  - Excludes Nek-related content
  - Adds landing page for BulkEnergyConservationICAction
  - Adds landing page for VolumetricHeatSourceICAction
  - Removes excess syntax information for both IC actions
  - Adds landing page for Cardinal/ICs custom syntax
- Tweaks name of FENIX user notes page in light of TMAP8 conflict
- Adds code coverage link to navigation
- Adds module content
- Add SQA dependencies and SQA requirement content for modules and apps

Refs idaholab#38 and idaholab#52

doc/cardinal_nek_exclude.yml

@@ -0,0 +1,35 @@
+- source/**
+- media/**
+- ~source/auxkernels/NekSpatialBinComponentAux.md
+- ~source/timesteppers/NekTimeStepper.md
+- ~source/mesh/NekRSMesh.md
+- ~source/postprocessors/boundary_specs.md
+- ~source/postprocessors/NekHeatFluxIntegral.md
+- ~source/postprocessors/NekNumRanks.md
+- ~source/postprocessors/NekMassFluxWeightedSideAverage.md
+- ~source/postprocessors/NekMassFluxWeightedSideIntegral.md
+- ~source/postprocessors/NekPressureSurfaceForce.md
+- ~source/postprocessors/NekScalarValuePostprocessor.md
+- ~source/postprocessors/NekSideAverage.md
+- ~source/postprocessors/NekSideExtremeValue.md
+- ~source/postprocessors/NekSideIntegral.md
+- ~source/postprocessors/NekUsrWrkBoundaryIntegral.md
+- ~source/postprocessors/NekVolumeAverage.md
+- ~source/postprocessors/NekVolumeExtremeValue.md
+- ~source/postprocessors/NekVolumeIntegral.md
+- ~source/postprocessors/PecletNumber.md
+- ~source/postprocessors/ReynoldsNumber.md
+- ~source/problems/NekRSProblem.md
+- ~source/problems/NekRSSeparateDomainProblem.md
+- ~source/problems/nek_classes.md
+- ~source/problems/nondimensional_problem.md
+- ~source/problems/output_solution.md
+- ~source/problems/NekRSStandaloneProblem.md
+- ~source/userobjects/NekBinnedPlaneAverage.md
+- ~source/userobjects/NekBinnedPlaneIntegral.md
+- ~source/userobjects/NekBinnedSideAverage.md
+- ~source/userobjects/NekBinnedSideIntegral.md
+- ~source/userobjects/NekBinnedVolumeAverage.md
+- ~source/userobjects/NekBinnedVolumeIntegral.md
+- ~source/userobjects/NekScalarValue.md
+- ~source/userobjects/velocity_component.md

doc/config.yml

@@ -3,12 +3,36 @@ Content:
         root_dir: ${ROOT_DIR}/doc/content
     framework:
         root_dir: ${MOOSE_DIR}/framework/doc/content
+    chemical_reactions:
+        root_dir: ${MOOSE_DIR}/modules/chemical_reactions/doc/content
     electromagnetics:
         root_dir: ${MOOSE_DIR}/modules/electromagnetics/doc/content
+    fluid_properties:
+        root_dir: ${MOOSE_DIR}/modules/fluid_properties/doc/content
+    heat_transfer:
+        root_dir: ${MOOSE_DIR}/modules/heat_transfer/doc/content
+    misc:
+        root_dir: ${MOOSE_DIR}/modules/misc/doc/content
+    navier_stokes:
+        root_dir: ${MOOSE_DIR}/modules/navier_stokes/doc/content
+    phase_field:
+        root_dir: ${MOOSE_DIR}/modules/phase_field/doc/content
+    reactor:
+        root_dir: ${MOOSE_DIR}/modules/reactor/doc/content
+    rdg:
+        root_dir: ${MOOSE_DIR}/modules/rdg/doc/content
     ray_tracing:
         root_dir: ${MOOSE_DIR}/modules/ray_tracing/doc/content
+    scalar_transport:
+        root_dir: ${MOOSE_DIR}/modules/scalar_transport/doc/content
+    solid_mechanics:
+        root_dir: ${MOOSE_DIR}/modules/solid_mechanics/doc/content
+    solid_properties:
+        root_dir: ${MOOSE_DIR}/modules/solid_properties/doc/content
     stochastic_tools:
         root_dir: ${MOOSE_DIR}/modules/stochastic_tools/doc/content
+    thermal_hydraulics:
+        root_dir: ${MOOSE_DIR}/modules/thermal_hydraulics/doc/content
     modules:
         root_dir: ${MOOSE_DIR}/modules/doc/content
         content:
@@ -17,6 +41,7 @@ Content:
             - help/finite_element_concepts/nodal_patch_recovery.md
             - application_development/performance_benchmarking.md
             - application_usage/restart_recover.md
+            - application_usage/command_line_usage.md
     python:
         root_dir: ${MOOSE_DIR}/python/doc/content
         content:
@@ -27,6 +52,11 @@ Content:
             - python/testers/**
             - python/CSVDiff.md
             - python/TestHarness.md
+    tmap8:
+        root_dir: ${ROOT_DIR}/tmap8/doc/content
+    cardinal:
+        root_dir: ${ROOT_DIR}/cardinal/doc/content
+        content: !include ${ROOT_DIR}/doc/cardinal_nek_exclude.yml
 
 Renderer:
     type: MooseDocs.base.MaterializeRenderer
@@ -49,7 +79,7 @@ Extensions:
             Software Quality:
                 Software Quality Assurance (SQA) Information: /sqa/index.md
                 Code Standards: sqa/fenix_scs.md
-                #Code Coverage: https://mooseframework.inl.gov/fenix/docs/coverage
+                Code Coverage: https://mooseframework.inl.gov/fenix/docs/coverage
             Help:
               FENIX Issues Page: https://github.com/idaholab/FENIX/issues
               FENIX Discussion Forum: https://github.com/idaholab/fenix/discussions
@@ -59,26 +89,51 @@ Extensions:
         executable: ${ROOT_DIR}
         remove:
             framework: !include ${MOOSE_DIR}/framework/doc/remove.yml
+            cardinal:
+                - /ICs/BulkEnergyConservationIC
+                - /Cardinal/ICs/BulkEnergyConservation/BulkEnergyConservationICAction
+                - /Cardinal/ICs/VolumetricHeatSource/VolumetricHeatSourceICAction
     MooseDocs.extensions.common:
         shortcuts: !include ${MOOSE_DIR}/framework/doc/globals.yml
     MooseDocs.extensions.acronym:
         acronyms:
             framework: !include ${MOOSE_DIR}/framework/doc/acronyms.yml
+            cardinal: !include ${ROOT_DIR}/cardinal/doc/acronyms.yml
             fenix:
                 FENIX: Fusion ENergy Integrated multiphys-X
                 PIC: particle-in-cell
                 CFD: computational fluid dynamics
                 CAD: computer-aided design
     MooseDocs.extensions.sqa:
         active: true
-        categories:
+        categories: # commented-out categories are not available
             fenix: !include ${ROOT_DIR}/doc/sqa_fenix.yml
             framework: !include ${MOOSE_DIR}/framework/doc/sqa_framework.yml
-            ray_tracing: !include ${MOOSE_DIR}/modules/ray_tracing/doc/sqa_ray_tracing.yml
+            #chemical_reactions: !include ${MOOSE_DIR}/modules/chemical_reactions/doc/sqa_chemical_reactions.yml
             electromagnetics: !include ${MOOSE_DIR}/modules/electromagnetics/doc/sqa_electromagnetics.yml
+            fluid_properties: !include ${MOOSE_DIR}/modules/fluid_properties/doc/sqa_fluid_properties.yml
+            heat_transfer: !include ${MOOSE_DIR}/modules/heat_transfer/doc/sqa_heat_transfer.yml
+            misc: !include ${MOOSE_DIR}/modules/misc/doc/sqa_misc.yml
+            navier_stokes: !include ${MOOSE_DIR}/modules/navier_stokes/doc/sqa_navier_stokes.yml
+            phase_field: !include ${MOOSE_DIR}/modules/phase_field/doc/sqa_phase_field.yml
+            reactor: !include ${MOOSE_DIR}/modules/reactor/doc/sqa_reactor.yml
+            rdg: !include ${MOOSE_DIR}/modules/rdg/doc/sqa_rdg.yml
+            ray_tracing: !include ${MOOSE_DIR}/modules/ray_tracing/doc/sqa_ray_tracing.yml
+            scalar_transport: !include ${MOOSE_DIR}/modules/scalar_transport/doc/sqa_scalar_transport.yml
+            solid_mechanics: !include ${MOOSE_DIR}/modules/solid_mechanics/doc/sqa_solid_mechanics.yml
+            solid_properties: !include ${MOOSE_DIR}/modules/solid_properties/doc/sqa_solid_properties.yml
             stochastic_tools: !include ${MOOSE_DIR}/modules/stochastic_tools/doc/sqa_stochastic_tools.yml
+            thermal_hydraulics: !include ${MOOSE_DIR}/modules/thermal_hydraulics/doc/sqa_thermal_hydraulics.yml
+            tmap8: !include ${ROOT_DIR}/tmap8/doc/sqa_tmap8.yml
+            #cardinal: !include ${ROOT_DIR}/cardinal/doc/sqa_cardinal.yml
         reports: !include ${ROOT_DIR}/doc/sqa_reports.yml
         repos:
             default: https://github.com/idaholab/fenix
     MooseDocs.extensions.template:
         active: true
+    MooseDocs.extensions.bibtex:
+        duplicates:
+            - hales15homogenization
+            - kim_phase-field_1999
+            - Incropera2002
+            - petersen

doc/content/syntax/Cardinal/ICs/BulkEnergyConservation/index.md

@@ -0,0 +1 @@
+!include BulkEnergyConservationIC.md

doc/content/syntax/Cardinal/ICs/VolumetricHeatSource/index.md

@@ -0,0 +1 @@
+!include VolumetricHeatSourceICAction.md

doc/content/syntax/Cardinal/ICs/index.md

@@ -0,0 +1 @@
+!include syntax/Cardinal/index.md

doc/content/syntax/Cardinal/index.md

@@ -0,0 +1,5 @@
+# Custom Cardinal Syntax
+
+Custom block syntax is used for both of the [VolumetricHeatSourceICAction.md] and
+[BulkEnergyConservationIC.md] objects. Examples of the usage of this syntax can
+be found in either of the linked pages.

doc/sqa_fenix.yml

@@ -2,6 +2,23 @@ directories:
     - ${ROOT_DIR}/test/tests
 specs:
     - tests
-dependencies:
+dependencies: # commented-out categories are not available
     - framework
+    #- chemical_reactions
+    - electromagnetics
+    - fluid_properties
+    - heat_transfer
+    - misc
+    - navier_stokes
+    - phase_field
+    - reactor
+    - rdg
+    - ray_tracing
+    - scalar_transport
+    - solid_mechanics
+    - solid_properties
+    - stochastic_tools
+    - thermal_hydraulics
+    - tmap8
+    #- cardinal
 reports: !include ${ROOT_DIR}/doc/sqa_reports.yml

doc/sqa_reports.yml

@@ -36,8 +36,23 @@ Requirements:
         working_dirs:
             - ${ROOT_DIR}/doc/content
             - ${MOOSE_DIR}/framework/doc/content
+            - ${MOOSE_DIR}/modules/chemical_reactions/doc/content
             - ${MOOSE_DIR}/modules/electromagnetics/doc/content
+            - ${MOOSE_DIR}/modules/fluid_properties/doc/content
+            - ${MOOSE_DIR}/modules/heat_transfer/doc/content
+            - ${MOOSE_DIR}/modules/misc/doc/content
+            - ${MOOSE_DIR}/modules/navier_stokes/doc/content
+            - ${MOOSE_DIR}/modules/phase_field/doc/content
+            - ${MOOSE_DIR}/modules/reactor/doc/content
+            - ${MOOSE_DIR}/modules/rdg/doc/content
             - ${MOOSE_DIR}/modules/ray_tracing/doc/content
+            - ${MOOSE_DIR}/modules/scalar_transport/doc/content
+            - ${MOOSE_DIR}/modules/solid_mechanics/doc/content
+            - ${MOOSE_DIR}/modules/solid_properties/doc/content
+            - ${MOOSE_DIR}/modules/stochastic_tools/doc/content
+            - ${MOOSE_DIR}/modules/thermal_hydraulics/doc/content
+            - ${ROOT_DIR}/tmap8/doc/content
+            - ${ROOT_DIR}/cardinal/doc/content
         directories:
             - ${ROOT_DIR}/test
         show_warning: false