Raidionics mni space display (#10) #29
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| name: Build Windows | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: [master, release] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: windows-2019 | |
| TARGET: windows | |
| CMD_BUILD: python setup.py bdist_wheel --plat-name win_amd64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.9" | |
| - name: Collect submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - name: Download ANTs | |
| uses: robinraju/release-downloader@main | |
| with: | |
| repository: "raidionics/Raidionics-dependencies" | |
| latest: true | |
| fileName: "ANTsX-v2.4.3_windows.zip" | |
| out-file-path: "downloads" | |
| - name: Extract ANTs | |
| run: | | |
| cd ${{github.workspace}}/downloads/ | |
| 7z x ${{github.workspace}}/downloads/ANTsX-v2.4.3_windows.zip | |
| mkdir ${{github.workspace}}/ANTs | |
| # mv ${{github.workspace}}/downloads/ANTsX-v2.4.3_windows/install ${{github.workspace}}/ANTs/ | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install wheel setuptools | |
| - name: Built wheel for ${{matrix.TARGET}} | |
| run: ${{matrix.CMD_BUILD}} | |
| - name: Upload Python wheel | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Python wheel | |
| path: ${{github.workspace}}/dist/raidionicsrads-*.whl | |
| if-no-files-found: error | |
| test: | |
| needs: build | |
| strategy: | |
| matrix: | |
| os: [ windows-2019, windows-2022 ] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: "Python wheel" | |
| - name: Install wheel | |
| run: python.exe -m | |
| pip install --no-cache-dir --force-reinstall --find-links=. raidionicsrads-* | |
| shell: bash | |
| - name: Test CLI | |
| run: | | |
| raidionicsrads --help | |
| raidionicsseg --help | |
| - name: Clone repo | |
| uses: actions/checkout@v4 | |
| - name: Segmentation pipeline unit test | |
| run: cd ${{github.workspace}}/tests && python segmentation_pipeline_test.py | |
| - name: Reporting pipeline unit test | |
| run: cd ${{github.workspace}}/tests && python reporting_pipeline_test.py | |
| - name: Reporting pipeline with BrainGrid unit test | |
| run: cd ${{github.workspace}}/tests && python reporting_pipeline_braingrid_test.py | |
| - name: Registration pipeline unit test with Python backend | |
| run: cd ${{github.workspace}}/tests && python registration_pipeline_test.py |