Build macOS ARM (macOS11) #4
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| name: Build macOS ARM (macOS11) | |
| on: | |
| # Allows to run the workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: Build RADS lib on macOS ARM (macOS 11) | |
| runs-on: self-hosted | |
| env: | |
| SYSTEM_VERSION_COMPAT: 0 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: | | |
| arch -arm64 brew reinstall zlib | |
| - name: Setup pyenv | |
| env: | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| MACOSX_DEPLOYMENT_TARGET: 11.0 | |
| PYTHON_CONFIGURE_OPTS: "--enable-framework" | |
| CFLAGS: "-Wno-implicit-function-declaration" | |
| LDFLAGS: "-L/usr/local/opt/zlib/lib" | |
| CPPFLAGS: "-I/usr/local/opt/zlib/include" | |
| PKG_CONFIG_PATH: "/usr/local/opt/zlib/lib/pkgconfig" | |
| uses: "gabrielfalcao/pyenv-action@v18" | |
| with: | |
| default: 3.8 | |
| command: pip3 install -U pip3 wheel setuptools | |
| - name: Collect submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - name: Download ANTs | |
| uses: robinraju/release-downloader@main | |
| with: | |
| repository: "raidionics/Raidionics-dependencies" | |
| latest: true | |
| fileName: "ANTsX-v2.4.3_macos_arm.tar.gz" | |
| out-file-path: "downloads" | |
| - name: Extract ANTs | |
| run: | | |
| cd ${{github.workspace}}/downloads/ | |
| tar -xzf ANTsX-v2.4.3_macos_arm.tar.gz -C ${{github.workspace}}/downloads/ | |
| mv ${{github.workspace}}/downloads/install ${{github.workspace}}/raidionicsrads/ANTs/ | |
| - name: Built wheel for MacOS ARM | |
| run: python3 setup.py bdist_wheel --plat-name macosx_11_0_arm64 | |
| - name: Upload Python wheel | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Python wheel | |
| path: ${{github.workspace}}/dist/raidionicsrads-*.whl | |
| if-no-files-found: error | |
| test: | |
| needs: build | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| runs-on: self-hosted | |
| steps: | |
| - name: Setup pyenv for Python ${{ matrix.python-version }} | |
| uses: "gabrielfalcao/pyenv-action@v18" | |
| with: | |
| default: ${{ matrix.python-version }} | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: "Python wheel" | |
| - name: Install wheel | |
| run: pip3 install --find-links=${{github.workspace}} --no-cache-dir --force-reinstall raidionicsrads-* | |
| shell: bash | |
| - name: Test CLI | |
| run: python3 -m raidionicsrads --help | |
| - name: Clone repo | |
| uses: actions/checkout@v4 | |
| - name: Segmentation pipeline unit test | |
| run: cd ${{github.workspace}}/tests && python3 segmentation_pipeline_test.py | |
| - name: Reporting pipeline unit test | |
| run: cd ${{github.workspace}}/tests && python3 reporting_pipeline_test.py | |
| - name: Reporting pipeline with BrainGrid unit test | |
| run: cd ${{github.workspace}}/tests && python3 reporting_pipeline_braingrid_test.py | |
| - name: Registration pipeline unit test with Python backend | |
| run: cd ${{github.workspace}}/tests && python3 registration_pipeline_test.py | |
| # - name: Test with pytest | |
| # run: | | |
| # pip install pytest | |
| # pytest --verbose tests/ |