Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

cosmetic changes in attempt to make the code structure clearer #317

Open
wants to merge 3 commits into
base: dev_api
Choose a base branch
from
Open

cosmetic changes in attempt to make the code structure clearer #317

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
1e17012
cosmetic changes in attempt to make the code structure clearer
Nov 19, 2020
b22efa3
remove an extra test print
Nov 19, 2020
13810bc
forced adding make_tracks_config
Nov 19, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion bin/make_tracks_file → bin/make_tracks_config
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-

from pygenometracks.makeTracksFile import main
from pygenometracks.makeTracksConfig import main

if __name__ == "__main__":
main()
0 pygenometracks/makeTracksFile.py → pygenometracks/makeTracksConfig.py
View file
Open in desktop
File renamed without changes.
6 changes: 3 additions & 3 deletions pygenometracks/tracksClass.py → pygenometracks/tracks/tracksClass.py
100644 → 100755
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,10 +12,10 @@
import matplotlib.gridspec
import matplotlib.cm
import mpl_toolkits.axisartist as axisartist
from . utilities import file_to_intervaltree, change_chrom_names
from .. utilities import file_to_intervaltree, change_chrom_names
from collections import OrderedDict
from pygenometracks.tracks.GenomeTrack import GenomeTrack
from pygenometracks.utilities import InputError
from . GenomeTrack import GenomeTrack
from .. utilities import InputError

import warnings

Expand Down
3 changes: 1 addition & 2 deletions setup.py
100644 → 100755
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,6 @@
__version__ = '%s'
"""


def update_version_py():
if not os.path.isdir(".git"):
print("This does not appear to be a Git repository.")
Expand Down Expand Up @@ -108,7 +107,7 @@ def checkProgramIsInstalled(self, program, args, where_to_download,
version=get_version(),
author='Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolf, Björn Grüning',
packages=find_packages(exclude=['tests']),
scripts=['bin/make_tracks_file', 'bin/pgt', 'bin/pyGenomeTracks'],
scripts=['bin/make_tracks_config', 'bin/pgt', 'bin/pyGenomeTracks'],
include_package_data=True,
package_dir={'pygenometracks': 'pygenometracks'},
url='http://pygenometracks.readthedocs.io',
Expand Down