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Dockerfile

@@ -1,30 +1,30 @@
-# Load R image
-FROM rocker/r-ver:4.3.0
-
-# DeGAUSS container metadata
- ENV degauss_name="daymet"
- ENV degauss_version="0.1.0"
- ENV degauss_description="daymet climate variables"
- ENV degauss_argument="short description of optional argument [default: 'insert_default_value_here']"
-
-# add OCI labels based on environment variables too
- LABEL "org.degauss.name"="${degauss_name}"
- LABEL "org.degauss.version"="${degauss_version}"
- LABEL "org.degauss.description"="${degauss_description}"
- LABEL "org.degauss.argument"="${degauss_argument}"
-
+# Load R image
+FROM rocker/r-ver:4.3.0
+
+# DeGAUSS container metadata
+ ENV degauss_name="daymet"
+ ENV degauss_version="0.1.1"
+ ENV degauss_description="daymet climate variables"
+ ENV degauss_argument="short description of optional argument [default: 'insert_default_value_here']"
+
+# add OCI labels based on environment variables too
+ LABEL "org.degauss.name"="${degauss_name}"
+ LABEL "org.degauss.version"="${degauss_version}"
+ LABEL "org.degauss.description"="${degauss_description}"
+ LABEL "org.degauss.argument"="${degauss_argument}"
+
 WORKDIR /app
 
  RUN apt-get update -y
- RUN apt-get install libxml2-dev zlib1g-dev libfontconfig1-dev libssl-dev libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libudunits2-dev cmake libnetcdf-dev libgdal-dev libgeos-dev libproj-dev libsqlite0-dev -y
-
-# Install R dependencies
- RUN R -e "install.packages(c('daymetr', 'tidyverse', 'terra', 'gtools', 'data.table', 'remotes', 'withr'))"
- RUN R --quiet -e "remotes::install_github('degauss-org/dht')"
-
-COPY entrypoint.R .
-
+ RUN apt-get install libxml2-dev zlib1g-dev libfontconfig1-dev libssl-dev libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libudunits2-dev cmake libnetcdf-dev libgdal-dev libgeos-dev libproj-dev libsqlite0-dev -y
+
+# Install R dependencies
+ RUN R -e "install.packages(c('daymetr', 'tidyverse', 'terra', 'gtools', 'data.table', 'remotes', 'withr'))"
+ RUN R --quiet -e "remotes::install_github('degauss-org/dht')"
+
+COPY entrypoint.R .
+
 WORKDIR /tmp
 
-ENTRYPOINT ["/usr/local/bin/Rscript", "/app/entrypoint.R"]
+ENTRYPOINT ["/usr/local/bin/Rscript", "/app/entrypoint.R"]
 

README.md

@@ -16,10 +16,10 @@ Note: The Daymet calendar is based on a standard calendar year. All Daymet years
 If `my_addresses.csv` is a file in the current working directory with ID column `id`, start and end date columns `start_date` and `end_date`, and coordinate columns named `lat` and `lon`, then the [DeGAUSS command](https://degauss.org/using_degauss.html#DeGAUSS_Commands):
 
 ```sh
-docker run --rm -v $PWD:/tmp ghcr.io/degauss-org/daymet:0.1.0 loyalty_degauss.csv
+docker run --rm -v $PWD:/tmp ghcr.io/degauss-org/daymet:0.1.1 loyalty_degauss.csv
 ```
 
-will produce `my_addresses_daymet_0.1.0.csv` with added columns:
+will produce `my_addresses_daymet_0.1.1.csv` with added columns:
 
 - **`tmax`**: maximum temperature
 - **`tmin`**: minimum temperature
@@ -29,7 +29,7 @@ will produce `my_addresses_daymet_0.1.0.csv` with added columns:
 - **`prcp`**: precipitation
 - **`dayl`**: day length
 
-Other columns may be present in the input `my_addresses.csv` file, and these other columns will be linked in and included in the output `my_addresses_daymet_0.1.0.csv` file.
+Other columns may be present in the input `my_addresses.csv` file, and these other columns will be linked in and included in the output `my_addresses_daymet_0.1.1.csv` file.
 
 ### Optional Arguments
 
@@ -43,7 +43,7 @@ Other columns may be present in the input `my_addresses.csv` file, and these oth
 An example DeGAUSS command with all optional arguments used would be:
 
 ```sh
-docker run --rm -v $PWD:/tmp ghcr.io/degauss-org/daymet:0.1.0 my_addresses.csv tmax,vp,prcp -88.263390 -87.525706 41.470117 42.154247 na
+docker run --rm -v $PWD:/tmp ghcr.io/degauss-org/daymet:0.1.1 my_addresses.csv tmax,vp,prcp -88.263390 -87.525706 41.470117 42.154247 na
 ```
 
 which will return maximum temperature, vapor pressure, and precipitation for observations within a bounding box of Cook County, IL. It is important to specify bounding box coordinates in the order of: `min_lon`, `max_lon`, `min_lat`, `max_lat`.