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Merge branch 'dev-trash' into 'master'
Dev trash See merge request ebi-biows/jdispatcher-viewers!1
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| # https://editorconfig.org | ||
|
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| root = true | ||
|
|
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| [*] | ||
| charset = utf-8 | ||
| indent_style = space | ||
| indent_size = 2 | ||
| end_of_line = lf | ||
| insert_final_newline = true | ||
| trim_trailing_whitespace = true | ||
|
|
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| [*.md] | ||
| insert_final_newline = false | ||
| trim_trailing_whitespace = false |
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| @@ -0,0 +1,11 @@ | ||
| { | ||
| "tabWidth": 2, | ||
| "useTabs": false, | ||
| "singleQuote": true, | ||
| "semi": true, | ||
| "bracketSpacing": true, | ||
| "arrowParens": "avoid", | ||
| "trailingComma": "es5", | ||
| "bracketSameLine": true, | ||
| "printWidth": 120 | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,11 @@ | ||
| // This will allow you to load `.json` files from disk | ||
| declare module "*.json" { | ||
| const value: any; | ||
| export default value; | ||
| declare module '*.json' { | ||
| const value: any; | ||
| export default value; | ||
| } | ||
|
|
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| // This will allow you to load JSON from remote URL responses | ||
| declare module "json!*" { | ||
| const value: any; | ||
| export default value; | ||
| declare module 'json!*' { | ||
| const value: any; | ||
| export default value; | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,52 +1,52 @@ | ||
| import svgToMiniDataURI from "mini-svg-data-uri"; | ||
| import {isBrowser, isNode} from "browser-or-node"; | ||
| import {VisualOutput} from "./visual-output-app"; | ||
| import {FunctionalPredictions} from "./functional-predictions-app"; | ||
| import svgToMiniDataURI from 'mini-svg-data-uri'; | ||
| import { isBrowser, isNode } from 'browser-or-node'; | ||
| import { VisualOutput } from './visual-output-app'; | ||
| import { FunctionalPredictions } from './functional-predictions-app'; | ||
| import { | ||
| validateJobId, | ||
| fetchData, | ||
| dataAsType, | ||
| getJdispatcherJsonURL, | ||
| validateSubmittedJobIdInput, | ||
| validateSubmittedDbfetchInput, | ||
| getIPRMCDataModelFlatFromXML, | ||
| } from "./other-utilities"; | ||
| import {ColorSchemeEnum} from "./custom-types"; | ||
| validateJobId, | ||
| fetchData, | ||
| dataAsType, | ||
| getJdispatcherJsonURL, | ||
| validateSubmittedJobIdInput, | ||
| validateSubmittedDbfetchInput, | ||
| getIPRMCDataModelFlatFromXML, | ||
| } from './other-utilities'; | ||
| import { ColorSchemeEnum } from './custom-types'; | ||
|
|
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| // plugin support & module support | ||
| // if (typeof window === "undefined") { | ||
| if (isBrowser) { | ||
| (window as any).VisualOutput = VisualOutput; | ||
| (window as any).FunctionalPredictions = FunctionalPredictions; | ||
| (window as any).validateJobId = validateJobId; | ||
| (window as any).svgToMiniDataURI = svgToMiniDataURI; | ||
| (window as any).fetchData = fetchData; | ||
| (window as any).dataAsType = dataAsType; | ||
| (window as any).getJdispatcherJsonURL = getJdispatcherJsonURL; | ||
| (window as any).validateSubmittedJobIdInput = validateSubmittedJobIdInput; | ||
| (window as any).validateSubmittedDbfetchInput = validateSubmittedDbfetchInput; | ||
| (window as any).getIPRMCDataModelFlatFromXML = getIPRMCDataModelFlatFromXML; | ||
| (window as any).ColorSchemeEnum = ColorSchemeEnum; | ||
| (window as any).VisualOutput = VisualOutput; | ||
| (window as any).FunctionalPredictions = FunctionalPredictions; | ||
| (window as any).validateJobId = validateJobId; | ||
| (window as any).svgToMiniDataURI = svgToMiniDataURI; | ||
| (window as any).fetchData = fetchData; | ||
| (window as any).dataAsType = dataAsType; | ||
| (window as any).getJdispatcherJsonURL = getJdispatcherJsonURL; | ||
| (window as any).validateSubmittedJobIdInput = validateSubmittedJobIdInput; | ||
| (window as any).validateSubmittedDbfetchInput = validateSubmittedDbfetchInput; | ||
| (window as any).getIPRMCDataModelFlatFromXML = getIPRMCDataModelFlatFromXML; | ||
| (window as any).ColorSchemeEnum = ColorSchemeEnum; | ||
| } | ||
| if (isNode) { | ||
| module.exports = { | ||
| VisualOutput: VisualOutput, | ||
| FunctionalPredictions: FunctionalPredictions, | ||
| validateJobId: validateJobId, | ||
| svgToMiniDataURI: svgToMiniDataURI, | ||
| fetchData: fetchData, | ||
| dataAsType: dataAsType, | ||
| getJdispatcherJsonURL: getJdispatcherJsonURL, | ||
| validateSubmittedJobIdInput: validateSubmittedJobIdInput, | ||
| validateSubmittedDbfetchInput: validateSubmittedDbfetchInput, | ||
| getIPRMCDataModelFlatFromXML: getIPRMCDataModelFlatFromXML, | ||
| ColorSchemeEnum: ColorSchemeEnum, | ||
| }; | ||
| module.exports = { | ||
| VisualOutput: VisualOutput, | ||
| FunctionalPredictions: FunctionalPredictions, | ||
| validateJobId: validateJobId, | ||
| svgToMiniDataURI: svgToMiniDataURI, | ||
| fetchData: fetchData, | ||
| dataAsType: dataAsType, | ||
| getJdispatcherJsonURL: getJdispatcherJsonURL, | ||
| validateSubmittedJobIdInput: validateSubmittedJobIdInput, | ||
| validateSubmittedDbfetchInput: validateSubmittedDbfetchInput, | ||
| getIPRMCDataModelFlatFromXML: getIPRMCDataModelFlatFromXML, | ||
| ColorSchemeEnum: ColorSchemeEnum, | ||
| }; | ||
| } | ||
|
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| // web-component support | ||
| import "./visual-output-webcomponent.ts"; | ||
| import "./functional-predictions-webcomponent.ts"; | ||
| import './visual-output-webcomponent.ts'; | ||
| import './functional-predictions-webcomponent.ts'; | ||
|
|
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| // demo index page with JobId input form (implemented in TypeScript) | ||
| import "./index.ts"; | ||
| import './index.ts'; |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,71 +1,69 @@ | ||
| import {fabric} from "fabric"; | ||
| import {ColorType} from "./custom-types"; | ||
| import { Gradient, FabricObject } from 'fabric'; | ||
| import { ColorType } from './custom-types'; | ||
|
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| export const defaultGradient: ColorType = { | ||
| 0.0: [255, 64, 64], | ||
| 0.25: [255, 255, 64], | ||
| 0.5: [64, 255, 64], | ||
| 0.75: [64, 255, 255], | ||
| 1.0: [64, 64, 255], | ||
| keys: [0.0, 0.25, 0.5, 0.75, 1.0], | ||
| 0.0: [255, 64, 64], | ||
| 0.25: [255, 255, 64], | ||
| 0.5: [64, 255, 64], | ||
| 0.75: [64, 255, 255], | ||
| 1.0: [64, 64, 255], | ||
| keys: [0.0, 0.25, 0.5, 0.75, 1.0], | ||
| }; | ||
|
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| export function colorDefaultGradient( | ||
| canvasObj: fabric.Object, | ||
| start: number, | ||
| end: number | ||
| ) { | ||
| canvasObj.set("fill", new fabric.Gradient({ | ||
| type: "linear", | ||
| coords: { | ||
| x1: start, | ||
| y1: 0, | ||
| x2: end, | ||
| y2: 0 | ||
| }, | ||
| colorStops: [ | ||
| {offset: 0.0, color: `rgb(${defaultGradient[0.0].join(",")})`}, | ||
| {offset: 0.25, color: `rgb(${defaultGradient[0.25].join(",")})`}, | ||
| {offset: 0.5, color: `rgb(${defaultGradient[0.5].join(",")})`}, | ||
| {offset: 0.75, color: `rgb(${defaultGradient[0.75].join(",")})`}, | ||
| {offset: 1.0, color: `rgb(${defaultGradient[1.0].join(",")})`} | ||
| ] | ||
| })); | ||
| export function colorDefaultGradient(canvasObj: FabricObject, start: number, end: number) { | ||
| canvasObj.set( | ||
| 'fill', | ||
| new Gradient({ | ||
| type: 'linear', | ||
| coords: { | ||
| x1: start, | ||
| y1: 0, | ||
| x2: end, | ||
| y2: 0, | ||
| }, | ||
| colorStops: [ | ||
| { offset: 0.0, color: `rgb(${defaultGradient[0.0].join(',')})` }, | ||
| { offset: 0.25, color: `rgb(${defaultGradient[0.25].join(',')})` }, | ||
| { offset: 0.5, color: `rgb(${defaultGradient[0.5].join(',')})` }, | ||
| { offset: 0.75, color: `rgb(${defaultGradient[0.75].join(',')})` }, | ||
| { offset: 1.0, color: `rgb(${defaultGradient[1.0].join(',')})` }, | ||
| ], | ||
| }) | ||
| ); | ||
| } | ||
|
|
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| export const ncbiBlastGradient: ColorType = { | ||
| 0: [0, 0, 0], | ||
| 40: [0, 32, 233], | ||
| 50: [117, 234, 76], | ||
| 80: [219, 61, 233], | ||
| 200: [219, 51, 36], | ||
| keys: [0, 40, 50, 80, 200], | ||
| 0: [0, 0, 0], | ||
| 40: [0, 32, 233], | ||
| 50: [117, 234, 76], | ||
| 80: [219, 61, 233], | ||
| 200: [219, 51, 36], | ||
| keys: [0, 40, 50, 80, 200], | ||
| }; | ||
|
|
||
| export function colorNcbiBlastGradient( | ||
| canvasObj: fabric.Object, | ||
| start: number, | ||
| end: number | ||
| ) { | ||
| canvasObj.set("fill", new fabric.Gradient({ | ||
| type: "linear", | ||
| coords: { | ||
| x1: start, | ||
| y1: 0, | ||
| x2: end, | ||
| y2: 0 | ||
| }, | ||
| colorStops: [ | ||
| {offset: 0.0, color: `rgb(${ncbiBlastGradient[0].join(",")})`}, | ||
| {offset: 0.199999, color: `rgb(${ncbiBlastGradient[0].join(",")})`}, | ||
| {offset: 0.2, color: `rgb(${ncbiBlastGradient[40].join(",")})`}, | ||
| {offset: 0.399999, color: `rgb(${ncbiBlastGradient[40].join(",")})`}, | ||
| {offset: 0.4, color: `rgb(${ncbiBlastGradient[50].join(",")})`}, | ||
| {offset: 0.599999, color: `rgb(${ncbiBlastGradient[50].join(",")})`}, | ||
| {offset: 0.6, color: `rgb(${ncbiBlastGradient[80].join(",")})`}, | ||
| {offset: 0.799999, color: `rgb(${ncbiBlastGradient[80].join(",")})`}, | ||
| {offset: 0.8, color: `rgb(${ncbiBlastGradient[200].join(",")})`}, | ||
| {offset: 1.0, color: `rgb(${ncbiBlastGradient[200].join(",")})`}, | ||
| ] | ||
| })); | ||
| export function colorNcbiBlastGradient(canvasObj: FabricObject, start: number, end: number) { | ||
| canvasObj.set( | ||
| 'fill', | ||
| new Gradient({ | ||
| type: 'linear', | ||
| coords: { | ||
| x1: start, | ||
| y1: 0, | ||
| x2: end, | ||
| y2: 0, | ||
| }, | ||
| colorStops: [ | ||
| { offset: 0.0, color: `rgb(${ncbiBlastGradient[0].join(',')})` }, | ||
| { offset: 0.199999, color: `rgb(${ncbiBlastGradient[0].join(',')})` }, | ||
| { offset: 0.2, color: `rgb(${ncbiBlastGradient[40].join(',')})` }, | ||
| { offset: 0.399999, color: `rgb(${ncbiBlastGradient[40].join(',')})` }, | ||
| { offset: 0.4, color: `rgb(${ncbiBlastGradient[50].join(',')})` }, | ||
| { offset: 0.599999, color: `rgb(${ncbiBlastGradient[50].join(',')})` }, | ||
| { offset: 0.6, color: `rgb(${ncbiBlastGradient[80].join(',')})` }, | ||
| { offset: 0.799999, color: `rgb(${ncbiBlastGradient[80].join(',')})` }, | ||
| { offset: 0.8, color: `rgb(${ncbiBlastGradient[200].join(',')})` }, | ||
| { offset: 1.0, color: `rgb(${ncbiBlastGradient[200].join(',')})` }, | ||
| ], | ||
| }) | ||
| ); | ||
| } |
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