generated from jhudsl/AnVIL_Template
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #9 from fhdsl/repo-sync/AnVIL_Template/default
🔄 Synced file(s) with jhudsl/AnVIL_Template
- Loading branch information
Showing
13 changed files
with
235 additions
and
374 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,107 @@ | ||
| name: Periodic URL Check | ||
|
|
||
| on: | ||
| workflow_dispatch: | ||
| schedule: | ||
| - cron: '0 0 1 * *' | ||
|
|
||
| jobs: | ||
| set-up: | ||
| name: Load user automation choices | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 | ||
|
|
||
| # Use the yaml-env-action action. | ||
| - name: Load environment from YAML | ||
| uses: doughepi/yaml-env-action@v1.0.0 | ||
| with: | ||
| files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence. | ||
| outputs: | ||
| toggle_url_check_periodically: "${{ env.URL_CHECK_PERIODICALLY }}" | ||
|
|
||
| url-check: | ||
| name: Check URLs | ||
| needs: set-up | ||
| if: ${{needs.set-up.outputs.toggle_url_check_periodically == 'yes'}} | ||
| runs-on: ubuntu-latest | ||
| container: | ||
| image: jhudsl/base_ottr:main | ||
|
|
||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 | ||
|
|
||
| # Delete the branch if this has been run before | ||
| - name: Delete branch locally and remotely | ||
| run: git push origin --delete preview-spell-error || echo "No branch to delete" | ||
|
|
||
| # Make the branch fresh | ||
| - name: Make the branch fresh | ||
| run: | | ||
| git config --global --add safe.directory $GITHUB_WORKSPACE | ||
| git config --global user.name 'github-actions[bot]' | ||
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | ||
| echo branch doesnt exist | ||
| git checkout -b preview-spell-error || echo branch exists | ||
| git push --set-upstream origin preview-spell-error || echo echo branch exists remotely | ||
| shell: bash | ||
|
|
||
| - name: Run the check | ||
| uses: jhudsl/ottr-reports@main | ||
| id: check_results | ||
| continue-on-error: true | ||
| with: | ||
| check_type: urls | ||
| error_min: 1 | ||
|
|
||
| - name: Declare file path and time | ||
| id: check-report | ||
| run: | | ||
| error_num=$(cat check_reports/url_checks.tsv | wc -l) | ||
| error_num="$((error_num-1))" | ||
| echo "error_num=$error_num" >> $GITHUB_OUTPUT | ||
| echo "error_url=https://github.com/${GITHUB_REPOSITORY}/blob/preview-spell-error/check_reports/url_checks.tsv" >> $GITHUB_OUTPUT | ||
| shell: bash | ||
|
|
||
| - name: Stop if failure | ||
| if: steps.check_results.outcome == 'failure' | ||
| run: exit 1 | ||
|
|
||
| - name: Print out error variables | ||
| run: | | ||
| echo ${{ steps.check-report.outputs.error_url }} | ||
| echo ${{ steps.check-report.outputs.error_num }} | ||
| - name: Find issues | ||
| id: find-issue | ||
| env: | ||
| GH_PAT: ${{ secrets.GH_PAT }} | ||
| run: | | ||
| echo "$GITHUB_REPOSITORY" | ||
| curl -o find_issue.R https://raw.githubusercontent.com/jhudsl/ottr-reports/main/scripts/find_issue.R | ||
| issue_exists=$(Rscript --vanilla find_issue.R --repo $GITHUB_REPOSITORY --git_pat $GH_PAT) | ||
| echo URL issue exists: $issue_exists | ||
| echo "issue_existence=$issue_exists" >> $GITHUB_OUTPUT | ||
| - name: If too many URL errors, then make an issue | ||
| if: ${{ steps.check-report.outputs.error_num >= 1 && steps.find-issue.outputs.issue_existence == 0}} | ||
| uses: JasonEtco/create-an-issue@v2 | ||
| with: | ||
| filename: .github/ISSUE_TEMPLATE/url-error.md | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| FILE_URL: ${{ steps.check-report.outputs.error_url }} | ||
| ERROR_NUM: ${{ steps.check-report.outputs.error_num }} | ||
|
|
||
| - name: If no URL errors than delete the branch we made | ||
| if: ${{ steps.check-report.outputs.error_num < 1 }} | ||
| run: | | ||
| git config --system --add safe.directory "$GITHUB_WORKSPACE" | ||
| git push origin --delete preview-spell-error || echo "No branch to delete" |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.