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Maintenance release

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@epnev epnev released this 24 Feb 19:04
· 451 commits to master since this release

Main changes

  1. Introducing manually_refine_components.m for interactive component addition and removal after initialization.
  2. Integration of handling 3d imaging data in various parts of the code including initialize_components.m, greedyROI.m, HALS.m, update_spatial_components.m, threshold_components.m, determine_search_location.m. Full handling of 3d imaging data is still under testing.
  3. Parallel implementation of threshold_components.m and determine_search_location.m
  4. Better estimation of temporal components and background when no initializer is present, e.g., when analyzing a new dataset with known spatial components.
  5. The noise image is used by default as a background image, since computation of the correlation image can become very expensive when the dataset is large.