Update config to add paired_end

friendsofstrandseq · Jun 26, 2024 · 36571f7 · 36571f7
1 parent 3c7f9d1
commit 36571f7
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Showing 2 changed files with 12 additions and 1 deletion.
diff --git a/config/config.yaml b/config/config.yaml
@@ -1,7 +1,7 @@
 # --------------------------------------------------------
 # Ashleys-QC pipeline Configuration
 # --------------------------------------------------------
-version: 2.3.2
+version: 2.3.3
 
 # Email for notifications about the pipeline's status
 email: ""
@@ -76,6 +76,9 @@ MultiQC: False
 # Enable or disable ashleys-qc automatic classification
 bypass_ashleys: False
 
+# Whether to use paired-end data or not
+paired_end: True
+
 # --------------------------------------------------------
 # Counts Configuration
 # --------------------------------------------------------

diff --git a/config/config_metadata.yaml b/config/config_metadata.yaml
@@ -37,6 +37,14 @@ bypass_ashleys:
   default: False
   category: "Quality Control"
 
+paired_end:
+  desc: "Enable / Disable paired-end data"
+  type: bool
+  required: False
+  default: True
+  lint_check: True
+  category: "Quality Control"
+
 multistep_normalisation:
   desc: "Enable / Disable multistep normalisation"
   type: bool