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main_test.yaml typo
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weber8thomas committed Jun 19, 2024
1 parent d4beada commit 5254ff2
Showing 1 changed file with 31 additions and 31 deletions.
62 changes: 31 additions & 31 deletions .github/workflows/main_test.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -6,45 +6,45 @@ on:
- "**"

jobs:
Linting:
runs-on: ubuntu-latest
steps:
- name: Checkout repository with submodules
uses: actions/checkout@v4
with:
submodules: 'recursive' # Ensures all submodules are checked out
lfs: true # Ensures LFS objects for the main repo are pulled
Linting:
runs-on: ubuntu-latest
steps:
- name: Checkout repository with submodules
uses: actions/checkout@v4
with:
submodules: 'recursive' # Ensures all submodules are checked out
lfs: true # Ensures LFS objects for the main repo are pulled

- name: Pull LFS objects in submodules
run: |
git submodule foreach --recursive 'git lfs pull'
- name: Pull LFS objects in submodules
run: |
git submodule foreach --recursive 'git lfs pull'
- name: Setup Python
uses: actions/setup-python@v2
- name: Setup Python
uses: actions/setup-python@v2

- name: Add Conda to system path
run: |
echo $CONDA/bin >> $GITHUB_PATH
- name: Add Conda to system path
run: |
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
conda install -c conda-forge mamba
- name: Install dependencies
run: |
conda install -c conda-forge mamba
- name: Setup snakemake
run: |
mamba install -c conda-forge -c bioconda snakemake snakemake-storage-plugin-http
- name: Setup snakemake
run: |
mamba install -c conda-forge -c bioconda snakemake snakemake-storage-plugin-http
- name: List contents of .tests
run: |
tree -h .tests
- name: List contents of .tests
run: |
tree -h .tests
- name: List contents of workflow/data
run: |
tree -h workflow/data
- name: List contents of workflow/data
run: |
tree -h workflow/data
- name: Run Snakemake Lint
run: |
snakemake --lint
- name: Run Snakemake Lint
run: |
snakemake --lint
# Testing_ashleys_with_custom_python:
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