Updating the different GH actions

friendsofstrandseq · Jun 19, 2024 · b0663da · b0663da
1 parent 936569c
commit b0663da
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Showing 2 changed files with 8 additions and 5 deletions.
diff --git a/.github/workflows/main_test.yaml b/.github/workflows/main_test.yaml
@@ -25,11 +25,11 @@ jobs:
   Linting:
     runs-on: ubuntu-latest
     steps:
-      - name: Checkout repository
+      - name: Checkout repository with submodules
         uses: actions/checkout@v4
-        # with:
-        #   submodules: 'recursive'  # Ensures all submodules are checked out
-        #   lfs: true                # Ensures LFS objects for the main repo are pulled
+        with:
+          submodules: 'recursive'  # Ensures all submodules are checked out
+          lfs: true                # Ensures LFS objects for the main repo are pulled
 
       - name: Pull LFS objects in submodules
         run: |
@@ -261,6 +261,7 @@ jobs:
     - Formatting
     - Linting
     - Testing-basic
+    - Testing-basic-with-slurm
     steps:
       - name: Checkout repository with submodules and LFS
         uses: actions/checkout@v4
@@ -298,6 +299,7 @@ jobs:
     - Formatting
     - Linting
     - Testing-basic
+    - Testing-basic-with-slurm
     steps:
       - name: Checkout repository with submodules and LFS
         uses: actions/checkout@v4
@@ -335,6 +337,7 @@ jobs:
     - Formatting
     - Linting
     - Testing-basic
+    - Testing-basic-with-slurm
     steps:
       - name: Checkout repository with submodules and LFS
         uses: actions/checkout@v4

diff --git a/config/config.yaml b/config/config.yaml
@@ -14,7 +14,7 @@ samples_to_process: []
 # --------------------------------------------------------
 
 # Absolute path to the data location (modify as needed)
-data_location: ""
+data_location: ".tests/data_CHR17"
 
 # Directory to publish important data (e.g., stats, plots, counts). Leave empty if not required.
 publishdir: ""