0.8.0

What's Changed

• Add assert_fasta_indexed by @msto in #186
• Add @clintval to CODEOWNERS by @clintval in #189
• Update pyproject.toml (#137) by @TimD1 in #184
• Require error codes on type: ignore pragmas by @msto in #190
• MetricWriter by @msto in #123
• Add cigar utility method query_alignment_offsets by @yfarjoun in #188

New Contributors

• @TimD1 made their first contribution in #184

Full Changelog: 0.7.1...0.8.0

0.7.1

What's Changed

• fix: longest homopolymer needs to be case insensitive by @nh13 in #181

Full Changelog: 0.7.0...0.7.1

0.7.0

What's Changed

• ci: remove the use of github-actions-ci environment by @nh13 in #179
• feat: add methods for computing run lengths of repeats in a sequence by @nh13 in #162

Full Changelog: 0.6.0...0.7.0

0.6.0

What's Changed

• feat: Add methods for UMI extraction from read name by @emmcauley in #118
• fix: RTD needs an __init__.py in fgpyo/platform/ by @emmcauley in #174
• fix: fgpyo.fasta.sequence_dictionary incorrect StrEnum import by @nh13 in #175

Full Changelog: 0.5.0...0.6.0

0.5.0

What's Changed

• Move to mkdocs from Sphinx by @nh13 in #135
• Add a lazy is_sorted function to collections by @clintval in #159
• feat: adds classes and methods for sequence dictionaries by @nh13 in #160
• feat: Lint tests directory by @msto in #163
• doc: Add installation of mkdocs dependencies to README by @msto in #164
• feat: move docs out of extras into their own group by @nh13 in #166
• feat: add hamming and levenshtein distance functions by @znorgaard in #167
• Revert "fix: Add return type hint to Metric.read()" by @msto in #173

New Contributors

• @znorgaard made their first contribution in #167

Full Changelog: 0.4.0...0.5.0

0.4.0

What's Changed

• feat: Add end property on SupplementaryAlignment by @msto in #105
• add a test to explicitly support columns out of order in Metric by @nh13 in #82
• chore: add CODEOWNERS by @msto in #113
• Add isort check to Github Action by @emmcauley in #116
• fix: Add return type hint to Metric.read() by @msto in #110
• fix: DataclassInstance and AttrInstance protocols by @msto in #108
• refactor: writeable -> writable by @msto in #119
• fix: r/w assertions by @msto in #121
• feat: Support stdin/stdout special cases in sam.reader/writer by @msto in #69
• chore: Update mypy config by @msto in #134
• chore: Switch to ruff by @msto in #140
• ci: update code-cov in GHA to use a token by @nh13 in #150
• • Added getitem and len to the Cigar class, pulling the answer… by @yfarjoun in #154
• chore: Add usual lints by @msto in #142
• Feat: add longest_hp_len() to fgpyo/sequence.py by @emmcauley in #157
• Feat: add gc_content() calculation method to fgpyo/sequence.py by @emmcauley in #156
• feat: speed up longest_homopolymer by @nh13 in #158

New Contributors

• @emmcauley made their first contribution in #116

Full Changelog: 0.3.0...0.4.0

0.3.0

What's Changed

• Feature/metric with dataclass or attr by @TedBrookings in #80

Full Changelog: 0.2.0...0.3.0

0.2.0

What's Changed

• Breaking Change: Drop support for python 3.7 by @jdidion in #98
• Support python 3.11 and 3.12 in CI, update black, flake8, and poetry versions by @jdidion in #99
• Factor out functions for parsers for built-in collections by @jdidion in #101

Full Changelog: 0.1.3...0.2.0

0.1.3

What's Changed

• Add fgpyo.sam.SupplementaryAlignment.from_read() constructor, which creates SupplementaryAlignments from a read's SA tag by @msto in #85
• Fix the check for None type in inspect._get_parser by @jdidion in #96

New Contributors

• @jdidion made their first contribution in #96

Full Changelog: 0.1.2...0.1.3

0.1.2

What's Changed

• Add a py.typed file for package to be PEP561 compliant by @clintval in #81

Full Changelog: 0.1.1...0.1.2