Remove obsolete extensions

genialis · Apr 16, 2024 · 812cc07 · 812cc07
1 parent f7759e8
commit 812cc07
Show file tree

Hide file tree

Showing 2 changed files with 0 additions and 458 deletions.
diff --git a/resolwe_bio/extensions.py b/resolwe_bio/extensions.py
@@ -1,68 +1,10 @@
 """Resolwe-bio extensions of Resolwe core."""
 
-from django.db.models import Q
 from django_filters import rest_framework as filters
 
 from resolwe.composer import composer
 
 
-class ExtendedCollectionFilter:
-    """Collection filter extension."""
-
-    descriptor__general__species = filters.CharFilter(
-        field_name="entity__descriptor__general__species",
-        lookup_expr="icontains",
-        distinct=True,
-    )
-    tissue_type = filters.CharFilter(method="_filter_by_tissue")
-    treatment = filters.CharFilter(method="_filter_by_treatment")
-    outcome_is_defined = filters.CharFilter(method="_filter_by_outcome")
-
-    def _filter_by_multiple_fields(self, queryset, fields, value):
-        """Filter by any of the given fields.
-
-        Return exactly those objects, who icontain `value` in at least one of
-        `fields`.
-        """
-
-        query = Q()
-        for field in fields:
-            query |= Q(**{field + "__icontains": value})
-
-        return queryset.filter(query).distinct()
-
-    def _filter_by_tissue(self, queryset, name, value):
-        locations = [
-            "entity__descriptor__general__organ",
-            "entity__descriptor__general__biosample_source",
-            "entity__descriptor__disease_information__organ_part",
-            "entity__descriptor__disease_information__biopsy_site",
-            "entity__descriptor__pathological_information__organ_part",
-            "entity__descriptor__pathological_information__biopsy_site",
-        ]
-        return self._filter_by_multiple_fields(queryset, locations, value)
-
-    def _filter_by_treatment(self, queryset, name, value):
-        locations = [
-            "entity__descriptor__general__biosample_treatment",
-            "entity__descriptor__treatment_type__drug",
-            "entity__descriptor__immuno_oncology_treatment_type__io_drug",
-        ]
-        return self._filter_by_multiple_fields(queryset, locations, value)
-
-    def _filter_by_outcome(self, queryset, name, value):
-        locations = [
-            "entity__descriptor__response_and_survival_analysis__clinical_benefit",
-            "entity__descriptor__response_and_survival_analysis__confirmed_bor",
-            "entity__descriptor__response_and_survival_analysis__unconfirmed_bor",
-            "entity__descriptor__response_and_survival_analysis__pfs",
-            "entity__descriptor__response_and_survival_analysis__os",
-            "entity__descriptor__response_and_survival_analysis__dfs",
-            "entity__descriptor__response_and_survival_analysis__ttp",
-        ]
-        return self._filter_by_multiple_fields(queryset, locations, value)
-
-
 class ExtendedDataFilter:
     """Data filter extensions."""
 
@@ -81,18 +23,4 @@ def filter_output_icontains(self, queryset, name, value):
     species = filters.CharFilter(method="filter_output_icontains")
 
 
-class ExtendedEntityFilter:
-    """Data filter extensions."""
-
-    def filter_species(self, queryset, name, value):
-        """Filter queryset by genome build."""
-        return queryset.filter(descriptor__general__species__icontains=value)
-
-    species = filters.CharFilter(method="filter_species")
-
-
-composer.add_extension(
-    "resolwe.flow.filters.CollectionFilter", ExtendedCollectionFilter
-)
 composer.add_extension("resolwe.flow.filters.DataFilter", ExtendedDataFilter)
-composer.add_extension("resolwe.flow.filters.EntityFilter", ExtendedEntityFilter)