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This repository has been archived by the owner on Apr 18, 2024. It is now read-only.

Issues: genomic-medicine-sweden/gmsmetapost

13 Open 35 Closed
13 Open 35 Closed
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Issues list

Regarding coverage plots documentation Improvements or additions to documentation enhancement New feature or request
#84 opened Oct 4, 2022 by mjamy
1
Add consensus enhancement New feature or request
#82 opened Sep 26, 2022 by sofstam
Validation enhancement New feature or request
#80 opened Sep 21, 2022 by sofstam
Add biopython to conda environment definition for retrieve_seqs.nf enhancement New feature or request
#76 opened Sep 20, 2022 by ljmesi
Run taxonkit profile2cami as a separate process enhancement New feature or request
#57 opened Sep 1, 2022 by sofstam
@sofstam
Use docker containers for both singularity and docker profiles enhancement New feature or request
#55 opened Aug 31, 2022 by ljmesi
@sofstam
2
Add documentation enhancement New feature or request
#54 opened Aug 31, 2022 by sofstam
1
Use nf-core modules for BWA Index and minimap2 index and align instead of local (tweaked) versions enhancement New feature or request
#30 opened Aug 17, 2022 by ljmesi
1
Option to blast the consensus sequence
#20 opened Jul 28, 2022 by sofstam
Plot coverage plots
#19 opened Jul 28, 2022 by sofstam
1 of 2 tasks
@mjamy
2
Filter the RPM > 20.
#16 opened Jul 28, 2022 by sofstam
1
Calculate the reads per million (RPM) and relative abundance for each taxon in the reports
#15 opened Jul 28, 2022 by sofstam
Filter hits enhancement New feature or request
#2 opened Jun 21, 2022 by sofstam
3 of 6 tasks
ProTip! Updated in the last three days: updated:>2025-01-24.