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38 Open 186 Closed
38 Open 186 Closed
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Issues list

Add spa-type analysis to Nanopore track improvement medium Medium priority
#375 opened Nov 25, 2024 by Emkago
@Emkago
Add SCCmec analysis to MRSA Nanopore track improvement medium Medium priority
#374 opened Nov 25, 2024 by Emkago Nanopore
@Emkago
Add more snippy output files improvement low Low priority
#373 opened Nov 18, 2024 by mhkc
@mhkc
Makefile using system tabix and bgzip bug Something isn't working high High priority
#372 opened Nov 15, 2024 by JPWerling
@ryanjameskennedy
Cleanup config files and duplicated code improvement medium Medium priority
#365 opened Nov 5, 2024 by ryanjameskennedy
@ryanjameskennedy
Add FoHM mutations to TBProfiler high High priority improvement
#363 opened Oct 29, 2024 by ryanjameskennedy
@ryanjameskennedy
Add human read depletion as optional pre-processing step improvement medium Medium priority
#361 opened Oct 28, 2024 by mhkc
@mhkc @ryanjameskennedy
Add postal code entry to "sample_list" file and provide in output improvement medium Medium priority
#356 opened Oct 16, 2024 by hrydbeck
@ryanjameskennedy
Create subrun command to partially run jasen modules improvement medium Medium priority
#355 opened Oct 3, 2024 by ryanjameskennedy
@ryanjameskennedy
Makefile species-specific installation improvement medium Medium priority
#351 opened Sep 17, 2024 by ryanjameskennedy
@samuell @ryanjameskennedy
1
Mask out IS6110 from delly variants medium Medium priority
#349 opened Sep 16, 2024 by mhkc
@ryanjameskennedy
Download medaka models improvement medium Medium priority
#341 opened Aug 22, 2024 by Emkago Nanopore
@samuell @Emkago @ryanjameskennedy
1
Add pHierCC module for Enterobase related actions improvement medium Medium priority
#339 opened Aug 15, 2024 by ryanjameskennedy
@ryanjameskennedy
Poor performance of Serotypefinder using fastq files as input bug Something isn't working high High priority
#329 opened Jul 10, 2024 by mhkc
@ryanjameskennedy
Add profile for Borrelia new analysis
#328 opened Jun 26, 2024 by ryanjameskennedy
@ryanjameskennedy
Additional requirements improvement medium Medium priority
#327 opened Jun 18, 2024 by hrydbeck
@mhkc
Makefile core usage argument improvement low Low priority
#326 opened Jun 14, 2024 by sylvinite
@samuell @sylvinite
Add profile for Pseudomonas aeruginosa new analysis
#306 opened May 21, 2024 by samuell
@samuell
Add profile for Acinetobacter baumannii new analysis
#305 opened May 21, 2024 by samuell
@samuell
Add profile for Enterococcus faecium new analysis
#303 opened May 21, 2024 by samuell
@samuell
Add profile for Enterococcus faecalis new analysis
#302 opened May 21, 2024 by samuell
@samuell
Check compatibility with Nanopore high High priority
#301 opened May 17, 2024 by Emkago
@Emkago
1
Add QC for Nanopore data high High priority improvement
#299 opened May 17, 2024 by Emkago Nanopore
1
@Emkago
Add species Neisseria gonorrhoeae low Low priority new analysis
#291 opened Apr 25, 2024 by fwa93
@ryanjameskennedy
4
Add general gram negative workflow improvement medium Medium priority
#286 opened Apr 11, 2024 by ryanjameskennedy General pipeline
@ryanjameskennedy
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