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Merge pull request #151 from getwilds/shapemapper
Adding Shapemapper Docker Image
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,52 @@ | ||
| # Use Ubuntu as the base image | ||
| FROM ubuntu:22.04 | ||
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| # Adding labels for the GitHub Container Registry | ||
| LABEL org.opencontainers.image.title="shapemapper" \ | ||
| org.opencontainers.image.description="Container image for the use of ShapeMapper in FH DaSL's WILDS" \ | ||
| org.opencontainers.image.version="2.3" \ | ||
| org.opencontainers.image.authors="wilds@fredhutch.org" \ | ||
| org.opencontainers.image.url=https://hutchdatascience.org/ \ | ||
| org.opencontainers.image.documentation=https://getwilds.org/ \ | ||
| org.opencontainers.image.source=https://github.com/getwilds/wilds-docker-library \ | ||
| org.opencontainers.image.licenses=MIT | ||
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| # Prevent interactive prompts during package installation | ||
| ENV DEBIAN_FRONTEND=noninteractive | ||
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| # Set shell options | ||
| SHELL ["/bin/bash", "-o", "pipefail", "-c"] | ||
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| # Update system and install dependencies with dynamic version fetching | ||
| RUN apt-get update && \ | ||
| apt-get upgrade -y && \ | ||
| # Store current versions in variables | ||
| WGET_VERSION=$(apt-cache policy wget | grep Candidate | awk '{print $2}') && \ | ||
| TAR_VERSION=$(apt-cache policy tar | grep Candidate | awk '{print $2}') && \ | ||
| PYTHON3_VERSION=$(apt-cache policy python3 | grep Candidate | awk '{print $2}') && \ | ||
| GNUTLS_VERSION=$(apt-cache policy gnutls-bin | grep Candidate | awk '{print $2}') && \ | ||
| CA_CERTS_VERSION=$(apt-cache policy ca-certificates | grep Candidate | awk '{print $2}') && \ | ||
| # Install packages with specific versions | ||
| apt-get install -y --no-install-recommends \ | ||
| wget="${WGET_VERSION}" \ | ||
| tar="${TAR_VERSION}" \ | ||
| python3="${PYTHON3_VERSION}" \ | ||
| gnutls-bin="${GNUTLS_VERSION}" \ | ||
| ca-certificates="${CA_CERTS_VERSION}" \ | ||
| && apt-get clean \ | ||
| && rm -rf /var/lib/apt/lists/* | ||
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| # Download and install ShapeMapper from release tarball | ||
| RUN wget -q https://github.com/Weeks-UNC/shapemapper2/releases/download/v2.3/shapemapper2-2.3.tar.gz \ | ||
| && tar -xzf shapemapper2-2.3.tar.gz \ | ||
| && rm shapemapper2-2.3.tar.gz \ | ||
| && mv shapemapper2-2.3 /opt/shapemapper | ||
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| # Add ShapeMapper to PATH | ||
| ENV PATH="/opt/shapemapper:${PATH}" | ||
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| # Create working directory | ||
| WORKDIR /data | ||
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| # Default command (can be overridden) | ||
| CMD ["shapemapper", "--help"] |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,52 @@ | ||
| # Use Ubuntu as the base image | ||
| FROM ubuntu:22.04 | ||
|
|
||
| # Adding labels for the GitHub Container Registry | ||
| LABEL org.opencontainers.image.title="shapemapper" \ | ||
| org.opencontainers.image.description="Container image for the use of ShapeMapper in FH DaSL's WILDS" \ | ||
| org.opencontainers.image.version="latest" \ | ||
| org.opencontainers.image.authors="wilds@fredhutch.org" \ | ||
| org.opencontainers.image.url=https://hutchdatascience.org/ \ | ||
| org.opencontainers.image.documentation=https://getwilds.org/ \ | ||
| org.opencontainers.image.source=https://github.com/getwilds/wilds-docker-library \ | ||
| org.opencontainers.image.licenses=MIT | ||
|
|
||
| # Prevent interactive prompts during package installation | ||
| ENV DEBIAN_FRONTEND=noninteractive | ||
|
|
||
| # Set shell options | ||
| SHELL ["/bin/bash", "-o", "pipefail", "-c"] | ||
|
|
||
| # Update system and install dependencies with dynamic version fetching | ||
| RUN apt-get update && \ | ||
| apt-get upgrade -y && \ | ||
| # Store current versions in variables | ||
| WGET_VERSION=$(apt-cache policy wget | grep Candidate | awk '{print $2}') && \ | ||
| TAR_VERSION=$(apt-cache policy tar | grep Candidate | awk '{print $2}') && \ | ||
| PYTHON3_VERSION=$(apt-cache policy python3 | grep Candidate | awk '{print $2}') && \ | ||
| GNUTLS_VERSION=$(apt-cache policy gnutls-bin | grep Candidate | awk '{print $2}') && \ | ||
| CA_CERTS_VERSION=$(apt-cache policy ca-certificates | grep Candidate | awk '{print $2}') && \ | ||
| # Install packages with specific versions | ||
| apt-get install -y --no-install-recommends \ | ||
| wget="${WGET_VERSION}" \ | ||
| tar="${TAR_VERSION}" \ | ||
| python3="${PYTHON3_VERSION}" \ | ||
| gnutls-bin="${GNUTLS_VERSION}" \ | ||
| ca-certificates="${CA_CERTS_VERSION}" \ | ||
| && apt-get clean \ | ||
| && rm -rf /var/lib/apt/lists/* | ||
|
|
||
| # Download and install ShapeMapper from release tarball | ||
| RUN wget -q https://github.com/Weeks-UNC/shapemapper2/releases/download/v2.3/shapemapper2-2.3.tar.gz \ | ||
| && tar -xzf shapemapper2-2.3.tar.gz \ | ||
| && rm shapemapper2-2.3.tar.gz \ | ||
| && mv shapemapper2-2.3 /opt/shapemapper | ||
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| # Add ShapeMapper to PATH | ||
| ENV PATH="/opt/shapemapper:${PATH}" | ||
|
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||
| # Create working directory | ||
| WORKDIR /data | ||
|
|
||
| # Default command (can be overridden) | ||
| CMD ["shapemapper", "--help"] |