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Adding STAR v2.7.4a #137

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Nov 26, 2024
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Adding STAR v2.7.4a #137

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41 changes: 41 additions & 0 deletions star/Dockerfile_2.7.4a
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# Using the Ubuntu base image
FROM ubuntu:oracular-20241009

# Adding labels for the GitHub Container Registry
LABEL org.opencontainers.image.title="star"
LABEL org.opencontainers.image.description="Container image for the use of STAR in FH DaSL's WILDS"
LABEL org.opencontainers.image.version="2.7.4a"
LABEL org.opencontainers.image.authors="wilds@fredhutch.org"
LABEL org.opencontainers.image.url=https://hutchdatascience.org/
LABEL org.opencontainers.image.documentation=https://getwilds.org/
LABEL org.opencontainers.image.source=https://github.com/getwilds/wilds-docker-library
LABEL org.opencontainers.image.licenses=MIT

# Installing prerequisites
RUN apt-get update \
&& apt-get install -y --no-install-recommends build-essential=12.10ubuntu1 wget=1.24.5-1ubuntu2 \
zlib1g-dev=1:1.3.dfsg+really1.3.1-1ubuntu1 autoconf=2.72-3 automake=1:1.16.5-1.3ubuntu1 \
libncurses-dev=6.5-2 libbz2-dev=1.0.8-6 liblzma-dev=5.6.2-2 libssl-dev=3.3.1-2ubuntu2 \
libcurl4-gnutls-dev=8.9.1-2ubuntu2 xxd=2:9.1.0496-1ubuntu6 \
&& rm -rf /var/lib/apt/lists/*

# Pulling and extracting STAR source code
RUN wget -q --no-check-certificate https://github.com/alexdobin/STAR/archive/2.7.4a.tar.gz && tar -xzf 2.7.4a.tar.gz

# Installing STAR
WORKDIR /STAR-2.7.4a/source
RUN make STAR
WORKDIR /
ENV PATH="${PATH}:/STAR-2.7.4a/source"

# Pulling and extracting Samtools source code
RUN wget -q --no-check-certificate https://github.com/samtools/samtools/releases/download/1.11/samtools-1.11.tar.bz2 && tar -jxf samtools-1.11.tar.bz2

# Installing Samtools
WORKDIR /samtools-1.11
RUN ./configure && make && make install
WORKDIR /

# Cleanup
RUN rm -rf samtools-1.11 samtools-1.11.tar.bz2