Fixing cromwell call in vc-test-run

getwilds · Dec 13, 2024 · 4e1ab75 · 4e1ab75
1 parent b9f3d93
commit 4e1ab75
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/.github/workflows/variant-calling-test-run.yml b/.github/workflows/variant-calling-test-run.yml
@@ -241,9 +241,8 @@ jobs:
           
           # Run workflow with more verbose logging
           java -Dbackend.providers.Local.config.root="workflow_logs" \
-                -Xmx4g \
-                -jar cromwell-86.jar run \
-                -v variantCalling/variantCalling.wdl \
+                -Xmx4g -jar cromwell-86.jar run \
+                variantCalling/variantCalling.wdl \
                 --inputs test/test-inputs.json \
                 --metadata-output workflow_logs/metadata.json \
                 2>&1 | tee workflow_logs/workflow.log