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WIP React-less HiGlass-less Gosling#1086

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sehilyi wants to merge 169 commits intogosling-lang:maingosling-lang/gosling.js:mainfrom etowahadams:mainetowahadams/gosling.js:mainCopy head branch name to clipboard

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Commits

Commits on Jun 12, 2024

• feat: new demo page

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  52b12e0

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• Merge pull request #1 from etowahadams/new-dev-server

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• feat: upgrade pixi

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• feat: pixi-manager

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• feat: alias

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• feat: add to demo

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• Merge pull request #2 from etowahadams/pixi-manager

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• Merge branch 'gosling-lang:main' into main

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• refactor: add react import

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• feat: remove higlass dependencies, add vendored dependencies

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• feat: vendored higlass imports

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• Merge pull request #3 from etowahadams/higlass-imports

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• Merge branch 'gosling-lang:main' into main

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• feat: higlass alias, fix pixi manager

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  3c1d8d2

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• feat: dummy track

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• feat: dummy track example

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• feat: higlass types

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• Merge pull request #4 from etowahadams/dummy-track

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• feat: export PixiTrack

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  f257186

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• feat: text track

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  e43796e

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• feat: text track alias

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  12a1363

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• feat: text track

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  099c357

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• feat: higlass utils

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  e7a4980

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• feat: text track example

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• Merge pull request #5 from etowahadams/text-track

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• feat: add signals

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  committed
  b435c83

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• feat: circular brush

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  52f6648

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• fix: alias name

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  91398aa

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• feat: circular brush example

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• Merge pull request #6 from etowahadams/circular-brush

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• Merge branch 'gosling-lang:main' into main

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• Merge branch 'gosling-lang:main' into main

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  authored
  6d6ab8c

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• feat: tile proxy

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  committed
  29bc2aa

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• feat: basic gosling track

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  committed
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• feat: make GoslingTrackClass standalone

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  deaa172

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• feat: remove HGC from mark drawing

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  901686a

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• feat: export TiledPixiTrack

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Commits on Jun 13, 2024

• feat: add interactors

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  committed
  952828a

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• feat: export hg datafetcher

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  committed
  0f7f84b

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• fix: linear brush model

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  committed
  63ac37a

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• feat: GoslingTrack plot

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  committed
  41c5bfd

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• feat: gosling track example

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  committed
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• Merge pull request #7 from etowahadams/gosling-track

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• feat: axis track

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  committed
  e16d445

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• feat: axis track example

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  committed
  e41130a

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• feat: brush linear

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  committed
  1778bae

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• fix: add missing type package

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  committed
  1048754

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• refactor: remove types

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  committed
  c56d5b0

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• feat: add example

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  committed
  d15977a

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• Merge pull request #8 from etowahadams/linear-brush

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• feat: rename to brush-circular

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  committed
  9bd22f4

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• feat: rename genomic axis

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  committed
  c5b95dd

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• feat: bigwig datafetcher

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  committed
  829142b

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• fix: update datafetchers

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  committed
  ce31563

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• feat: compile

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  committed
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Commits on Jun 14, 2024

• feat: add basic layout

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Commits on Jun 17, 2024

• feat: new examples

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  committed
  e030b4a

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• feat: new render function

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  committed
  19cfcb9

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• refactor: split into files

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  committed
  67928cb

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Commits on Jun 18, 2024

• feat: beddb data

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  committed
  124a9e4

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• feat: don't show labels on overlay tracks

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  committed
  88a8b9f

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• refactor: rendering

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  committed
  7b68785

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• feat: corces example

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  committed
  90455f2

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• feat: brush linear

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  a2ff1fe

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• feat: simple linked views

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  committed
  4298cd3

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Commits on Jun 19, 2024

• feat: linked brush

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  committed
  58b095f

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Commits on Jun 20, 2024

• feat: refactored linking

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  committed
  d0e4591

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• fix: linkedEncoding

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  committed
  9fa84fe

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• refactor: clean up circular brush

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  committed
  ba16d2a

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Commits on Jun 21, 2024

• feat: dual circular brush plot

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  committed
  11775fd

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• feat: linked circle

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  committed
  b68abc8

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• fix: brushing

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  65f0a31

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• Merge pull request #9 from etowahadams/spec-to-pos

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• feat: identify broken track

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  committed
  8d66d03

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Commits on Jun 24, 2024

• fix: give correct bounding box for circular

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  committed
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• fix: cancer spec

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• Merge pull request #10 from etowahadams/fix-cancer-vis

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• feat: mocked worker

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  committed
  a6e54d4

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• make vitest run on demo

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  committed
  e50c0e0

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• test: linkedEncoding

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  committed
  41f5488

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• Merge pull request #11 from etowahadams/fix-tests

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• feat: heatmap plot

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  committed
  ae2e062

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• feat: alias for heatmap

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  committed
  20720e3

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• feat: heatmap example

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  committed
  cd34ca8

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• refactor: heatmap plot inputs

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  committed
  db1fd6b

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• refactor heatmap internals

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  committed
  b662ed0

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• feat: introduce signals

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  committed
  e4dafe3

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• copy over zoomPan interactor

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  8bde195

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Commits on Jun 25, 2024

• feat: zoomPanXY interactor

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  committed
  95e2891

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• feat: full working zoomXY

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  committed
  4f35c1a

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• refactor: rename to panZoomHeatmap

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  committed
  8fa24b0

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• feat: heatmap options

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  committed
  08824a8

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• Merge pull request #12 from etowahadams/heatmap

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• feat: refactor connectivity

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  committed
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• Merge pull request #13 from etowahadams/refactor-linking

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• feat: working heatmap

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  committed
  ccac22c

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• feat: working heatmap

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  committed
  12c29e5

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Commits on Jun 26, 2024

• feat: add basic heatmap axis

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  committed
  9e1bc6c

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• feat: basic reverse orientation

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  committed
  00a0c2f

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• feat: reverse example

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  committed
  2c0fb9f

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• feat: panZoom for axis track

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  committed
  7353692

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• feat: vertical Gosling track

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  committed
  9ac8874

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• feat: make brushes use new interactor

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  committed
  358002f

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• feat: working example

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  committed
  ff2cccb

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• feat: basic fix to heatmap scaling

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  committed
  8618c1c

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Commits on Jun 27, 2024

• feat: working heatmap x and y

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  committed
  2f79d6d

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• feat: refine heatmap axis

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  committed
  6e11667

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• feat: static brushes

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  ca64862

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• Merge pull request #14 from etowahadams/heatmap-rendering

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Commits on Jun 28, 2024

• fix: unused imports

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  committed
  6847ced

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• refine matrix linking

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  committed
  390e5f7

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• feat: basic gosling component

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  committed
  d75df4d

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• feat: basic editor

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  committed
  608a0dc

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• fix: x domain

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  16ee5b7

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• feat: fix linking bugs

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  426f8cc

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• remove old test

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  79a885f

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• Merge pull request #15 from etowahadams/basic-gos-component

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Commits on Jul 1, 2024

• fix: csv datafetcher options

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  committed
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Commits on Jul 2, 2024

• feat: add csv example

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  314f4be

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• fix: give spec

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  9c7f6b8

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• Merge pull request #16 from etowahadams/fix-give

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• fix: json data fetcher

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• Merge pull request #17 from etowahadams/fix-json-data

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• fix: single overlay

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  0d13bfa

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• fix: no show heatmap label

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  bb86b7d

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• fix: move effect to tracks

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• only put interactor if not overlaid on previous

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  f7f9747

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• fix: bounding box calculation

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  6bdc6f9

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Commits on Jul 3, 2024

• feat: add basic y domain

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  2874b20

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• feat: add test

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  25f17b2

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• fix panZoom yDomain

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  d39eaf6

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• feat: yDomain for gosling plot

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  committed
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• update matrix example

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  committed
  dd14c20

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• fix: multiple same linkingId

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  0a98c43

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• update matrix

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  e6a8166

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• Merge pull request #18 from etowahadams/matrix-annotations

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• reorganize files

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  committed
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Commits on Jul 6, 2024

• feat: basic resizing

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  65a2ab8

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• refactor no more callback

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  committed
  db148fe

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• resize pixi canvas after rendering

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  328988a

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• feat: rescale height

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  committed
  fc8117f

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• fixes for responsive height

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  c6bd779

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• Merge pull request #19 from etowahadams/responsive-width

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• pixi manager property comment

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  d591b16

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• feat: basic pixi manager persistance

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  committed
  664bd44

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• remove console warns

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• Merge pull request #20 from etowahadams/better-component

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• fix: brushes and types

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  7b07dc8

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• comment about types

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  789f7cf

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• add documentation

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• Merge pull request #21 from etowahadams/color-brushes

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• feat: use color

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• Merge pull request #22 from etowahadams/fix-heatmap-color

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• feat: dummy track

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• Merge pull request #23 from etowahadams/add-dummy-track

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• make csv data fetcher take assembly

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• Merge pull request #24 from etowahadams/fix-csv

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• feat: gff data fetcher

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  committed
  943b5be

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• feat: bam

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  committed
  7f217a5

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• feat: bed data fetcher

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  committed
  f217432

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• feat: vcf data fetcher

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  committed
  fd2b1ee

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• Merge pull request #25 from etowahadams/other-data-types

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Commits on Jul 7, 2024

• feat: basic tooltip

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  committed
  c2d0548

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• feat: working tooltip on static

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  committed
  beebbbf

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• no zoom pan with alt key

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• clear brush when click

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Commits on Jul 8, 2024

• clarify linked encoding

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  69ff028

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• Merge pull request #26 from etowahadams/tooltip

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• add explanation

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