v2.0.dev0
Pre-release
Pre-release
What's Changed
- Use '*' as a wildcard for coordinate exact searches by @susannasiebert in #84
- Add new variant search capabilities by @susannasiebert in #73
- Add command to annotate an existing VCF with CIViC variants by @susannasiebert in #87
- Improve tests coverage by @susannasiebert in #89
- Make CIViCpy Python >=3.5 compatible by @susannasiebert in #91
- Add additional evidence/assertion fields to the CIViC consequence annotation by @susannasiebert in #92
- Add deprecation warnings to civic.get_all_x_ids methods by @susannasiebert in #94
- Throw fatal error when using
-
as the alt or ref in a coordinate query by @susannasiebert in #95 - Implement variant search by HGVS expression by @susannasiebert in #96
- A few variant coordinate search improvements by @susannasiebert in #97
- Support reference build NCBI36/hg18 by @susannasiebert in #98
- update requirements files by @ahwagner in #99
- Fix import statement by @susannasiebert in #100
- Fix typo in VCF CSQ description by @susannasiebert in #102
- Skip cache creation test because it runs a long time and will freeze up CIViC if run in parallel on travis-ci by @susannasiebert in #105
- Handle
=
in synonymous variant names by @susannasiebert in #111 - Use the pagination ability of the advanced search endpoint when fetching all records by @susannasiebert in #112
- Convert CIVICPY_CACHE_TIMEOUT_DAYS environment variable to int by @dameyerdave in #123
- Update civicpy to work with the new CIViC API by @korikuzma in #128
- add github action to make pypi release when a release is made on github by @korikuzma in #130
New Contributors
- @dameyerdave made their first contribution in #123
- @korikuzma made their first contribution in #128
Full Changelog: 1.0.1...v2.0.dev0