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more detailed installation instructions
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haesleinhuepf committed Jan 9, 2022
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Expand Up @@ -88,16 +88,23 @@ This [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [c

## Installation

You can install `napari-accelerated-pixel-and-object-classification` via [pip]. Note: you also need [pyopencl](https://documen.tician.de/pyopencl/).
It is recommended to install the plugin in a conda environment. Therefore install conda first, e.g. [mini-conda](https://docs.conda.io/en/latest/miniconda.html).
If you never worked with conda before, reading this [short introduction](https://github.com/BiAPoL/Bio-image_Analysis_with_Python/blob/main/conda_basics/01_conda_environments.md) might be helpful.

conda install pyopencl
pip install napari-accelerated-pixel-and-object-classification

In case of issues in napari, make sure these dependencies are installed properly:

pip install pyclesperanto_prototype
pip install apoc
Optional: Setup a fresh conda environment, activate it and install napari:

```
conda create --name napari_apoc python=3.9
conda activate napari_apoc
conda install napari
```

If your conda environment is set up, you can install `napari-accelerated-pixel-and-object-classification` using [pip]. Note: you need [pyopencl](https://documen.tician.de/pyopencl/) first.

```
conda install pyopencl
pip install napari-accelerated-pixel-and-object-classification
```
## Contributing

Contributions, feedback and suggestions are very welcome. Tests can be run with [tox], please ensure
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