H-3845: Fix Docker set up for Yarn 4 + Node 22

[CiaranMn]

🌟 What is the purpose of this PR?

Introduces some fixes to Dockerfiles necessary to use Yarn 4 with Node 22 to:

1. enable corepack, with a directory that the runner user can write to
2. Move some comments in the .env file so that they aren't parsed as values by Yarn can be parsed correctly

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 21.72%. Comparing base (7b35117) to head (708d83c).
Report is 19 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #5973   +/-   ##
=======================================
  Coverage   21.72%   21.72%           
=======================================
  Files         566      566           
  Lines       19157    19157           
  Branches     2752     2755    +3     
=======================================
  Hits         4162     4162           
  Misses      14943    14943           
  Partials       52       52           

Flag	Coverage Δ
apps.hash-ai-worker-ts	1.32% <ø> (ø)
apps.hash-api	1.16% <ø> (ø)
blockprotocol.type-system	46.42% <ø> (ø)
local.harpc-client	50.17% <ø> (ø)
local.hash-backend-utils	8.81% <ø> (ø)
local.hash-graph-sdk	58.62% <ø> (ø)
local.hash-isomorphic-utils	0.98% <ø> (ø)
local.hash-subgraph	24.54% <ø> (ø)
rust.deer	6.66% <ø> (ø)
rust.error-stack	72.51% <ø> (ø)
rust.sarif	88.66% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[github-actions]

Benchmark results

@rust/hash-graph-benches – Integrations

representative_read_entity

Function	Value	Mean	Flame graphs
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/playlist/v/1	$$17.1 \mathrm{ms} \pm 178 \mathrm{μs}\left({\color{lightgreen}-28.072 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/uk-address/v/1	$$16.4 \mathrm{ms} \pm 194 \mathrm{μs}\left({\color{gray}-0.511 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/organization/v/1	$$16.5 \mathrm{ms} \pm 199 \mathrm{μs}\left({\color{lightgreen}-6.913 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/book/v/1	$$16.2 \mathrm{ms} \pm 167 \mathrm{μs}\left({\color{lightgreen}-11.665 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/person/v/1	$$16.5 \mathrm{ms} \pm 179 \mathrm{μs}\left({\color{lightgreen}-6.789 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/block/v/1	$$16.4 \mathrm{ms} \pm 161 \mathrm{μs}\left({\color{lightgreen}-5.775 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/building/v/1	$$15.7 \mathrm{ms} \pm 177 \mathrm{μs}\left({\color{lightgreen}-11.757 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/song/v/1	$$15.7 \mathrm{ms} \pm 175 \mathrm{μs}\left({\color{lightgreen}-35.745 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/page/v/2	$$15.8 \mathrm{ms} \pm 183 \mathrm{μs}\left({\color{lightgreen}-23.199 \mathrm{\%}}\right) $$	Flame Graph

representative_read_multiple_entities

Function	Value	Mean	Flame graphs
entity_by_property	depths: DT=255, PT=255, ET=255, E=255	$$69.1 \mathrm{ms} \pm 315 \mathrm{μs}\left({\color{gray}1.56 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=0, E=0	$$39.2 \mathrm{ms} \pm 261 \mathrm{μs}\left({\color{lightgreen}-7.239 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=2, PT=2, ET=2, E=2	$$58.3 \mathrm{ms} \pm 329 \mathrm{μs}\left({\color{gray}-1.506 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=0, E=2	$$44.8 \mathrm{ms} \pm 294 \mathrm{μs}\left({\color{gray}-1.627 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=2, E=2	$$50.6 \mathrm{ms} \pm 180 \mathrm{μs}\left({\color{gray}0.422 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=2, ET=2, E=2	$$54.9 \mathrm{ms} \pm 217 \mathrm{μs}\left({\color{gray}-3.019 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=255, PT=255, ET=255, E=255	$$107 \mathrm{ms} \pm 617 \mathrm{μs}\left({\color{gray}4.36 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=0, E=0	$$42.2 \mathrm{ms} \pm 124 \mathrm{μs}\left({\color{gray}3.47 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=2, PT=2, ET=2, E=2	$$101 \mathrm{ms} \pm 505 \mathrm{μs}\left({\color{gray}4.51 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=0, E=2	$$82.9 \mathrm{ms} \pm 267 \mathrm{μs}\left({\color{gray}4.78 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=2, E=2	$$92.3 \mathrm{ms} \pm 662 \mathrm{μs}\left({\color{gray}3.61 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=2, ET=2, E=2	$$96.8 \mathrm{ms} \pm 325 \mathrm{μs}\left({\color{gray}4.41 \mathrm{\%}}\right) $$	Flame Graph

representative_read_entity_type

Function	Value	Mean	Flame graphs
get_entity_type_by_id	Account ID: d4e16033-c281-4cde-aa35-9085bf2e7579	$$2.12 \mathrm{ms} \pm 7.49 \mathrm{μs}\left({\color{gray}-0.643 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_complete_one_depth

Function	Value	Mean	Flame graphs
entity_by_id	50 entities	$$5.60 \mathrm{s} \pm 283 \mathrm{ms}\left({\color{red}1972 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	5 entities	$$26.5 \mathrm{ms} \pm 91.4 \mathrm{μs}\left({\color{gray}-2.005 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1 entities	$$20.4 \mathrm{ms} \pm 76.4 \mathrm{μs}\left({\color{gray}-2.999 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10 entities	$$56.8 \mathrm{ms} \pm 166 \mathrm{μs}\left({\color{gray}-2.696 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	25 entities	$$174 \mathrm{ms} \pm 804 \mathrm{μs}\left({\color{gray}-3.589 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_linkless

Function	Value	Mean	Flame graphs
entity_by_id	1 entities	$$1.94 \mathrm{ms} \pm 8.12 \mathrm{μs}\left({\color{gray}-0.407 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	100 entities	$$2.11 \mathrm{ms} \pm 8.60 \mathrm{μs}\left({\color{gray}-1.229 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10 entities	$$1.94 \mathrm{ms} \pm 5.66 \mathrm{μs}\left({\color{gray}-2.199 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1000 entities	$$3.09 \mathrm{ms} \pm 11.1 \mathrm{μs}\left({\color{red}6.34 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10000 entities	$$13.3 \mathrm{ms} \pm 64.4 \mathrm{μs}\left({\color{red}31.9 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_complete_zero_depth

Function	Value	Mean	Flame graphs
entity_by_id	50 entities	$$4.17 \mathrm{ms} \pm 30.2 \mathrm{μs}\left({\color{gray}4.82 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	5 entities	$$1.94 \mathrm{ms} \pm 10.1 \mathrm{μs}\left({\color{gray}-1.819 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1 entities	$$1.93 \mathrm{ms} \pm 11.7 \mathrm{μs}\left({\color{gray}-0.993 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10 entities	$$2.13 \mathrm{ms} \pm 9.36 \mathrm{μs}\left({\color{gray}-0.735 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	25 entities	$$2.69 \mathrm{ms} \pm 9.43 \mathrm{μs}\left({\color{lightgreen}-18.823 \mathrm{\%}}\right) $$	Flame Graph