MyScripts

A repository containing all scripts I'm using. Contains some very useful scripts as well as scripts under development. Mainly used for backups.

Name		Name	Last commit message	Last commit date
Latest commit History 43 Commits
old		old
.gitignore		.gitignore
LookupTaxonDetails3.py		LookupTaxonDetails3.py
README.md		README.md
assign_taxonomy_nt.sh		assign_taxonomy_nt.sh
assign_taxonomy_to_NCBI_staxids.sh		assign_taxonomy_to_NCBI_staxids.sh
blast_filter.py		blast_filter.py
blast_filtering.bash		blast_filtering.bash
boldigger_add_info.py		boldigger_add_info.py
coil_processing.R		coil_processing.R
concat_fastq_files.py		concat_fastq_files.py
convert_coverage_to_relAbundance.py		convert_coverage_to_relAbundance.py
deinterleave_fastq_reads.sh		deinterleave_fastq_reads.sh
esv_table_taxa_abundance_analysis.py		esv_table_taxa_abundance_analysis.py
fasta_to_tab		fasta_to_tab
fastq-to-fasta.sh		fastq-to-fasta.sh
fastqc_and_multiqc_on_raw_read_dir.sh		fastqc_and_multiqc_on_raw_read_dir.sh
fastqc_on_R1_R2_and_optional_trimming.sh		fastqc_on_R1_R2_and_optional_trimming.sh
filter-fasta.awk		filter-fasta.awk
interleave-reads.sh		interleave-reads.sh
mergeFilesOnColumn.pl		mergeFilesOnColumn.pl
merge_on_outer.py		merge_on_outer.py
microDecon.R		microDecon.R
nonpareil_set_processing.R		nonpareil_set_processing.R
read_mapping_bowtie2.sh		read_mapping_bowtie2.sh
read_mapping_bwa.sh		read_mapping_bwa.sh
tabtofasta.pl		tabtofasta.pl
taxa_summary.R		taxa_summary.R
test_distance_methods_on_MDS.R		test_distance_methods_on_MDS.R
trimming_with_phred_scores_and_fastqc_report.sh		trimming_with_phred_scores_and_fastqc_report.sh

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