fix cutoff comparison

hgb-bin-proteomics · Jan 24, 2024 · 5f5871d · 5f5871d
1 parent 6bff9c3
commit 5f5871d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/msannika_fdr.py b/msannika_fdr.py
@@ -159,7 +159,7 @@ def get_cutoff(data: pd.DataFrame, fdr: float) -> float:
     def validate(data: pd.DataFrame, fdr: float) -> pd.DataFrame:
 
         cutoff = MSAnnika_CSM_Validator.get_cutoff(data, fdr)
-        df = data[data["Combined Score"] > cutoff].copy()
+        df = data[data["Combined Score"] >= cutoff].copy()
 
         if "Confidence" not in df.columns:
             return df
@@ -193,7 +193,7 @@ def get_cutoff(data: pd.DataFrame, fdr: float) -> float:
     def validate(data: pd.DataFrame, fdr: float) -> pd.DataFrame:
 
         cutoff = MSAnnika_Crosslink_Validator.get_cutoff(data, fdr)
-        df = data[data["Best CSM Score"] > cutoff].copy()
+        df = data[data["Best CSM Score"] >= cutoff].copy()
         df["Confidence"] = df.apply(lambda row: "High", axis = 1)
 
         return df