Add support for Amazon ECR

build.sh

@@ -1,3 +1,5 @@
 #!/bin/bash
 
-docker build -t cellranger-arc:1.0.0 .
+source config.sh
+
+docker build -t ${image_name}:${version} .

config.sh

@@ -0,0 +1,9 @@
+version="1.0.1"
+
+# docker related
+registry="583643567512.dkr.ecr.us-east-1.amazonaws.com"
+image_name="cellranger-arc"
+
+# set this to 1 if you want to create a repository in AWS ECR
+# set this to 0 for Docker Hub
+create_ecr_repo=1

package.sh

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+source config.sh
+
+echo "${registry}/${image_name}:${version}"
+
+docker tag ${image_name}:${version} ${registry}/${image_name}:${version}
+if [ $create_ecr_repo == 1 ]
+then
+    # only create if not exist
+    aws ecr describe-repositories --repository-name ${image_name} 2> /dev/null
+    if [ $? != 0 ]
+    then
+        aws ecr create-repository --repository-name ${image_name}
+    fi
+fi
+docker push ${registry}/${image_name}:${version}