Include index and improve reports (#15)

* fix instalation paths

* include version and fix CI

* fix validation

* fix validation

* This fixes #13

* include index, remove dependency, improve report

* fix validation

* remove deprecate text in docs

Dockerfile

@@ -9,7 +9,12 @@ RUN DEBIAN_FRONTEND=noninteractive apt-get install -y \
     wget \
     libssl-dev \
     libcurl4-openssl-dev \
-    r-base
+    r-base \
+    r-cran-curl \
+    r-cran-openssl \
+    r-cran-httr \
+    r-cran-plotly \
+    r-cran-cairo
 RUN rm -rf /var/lib/apt/lists/*
 
 RUN wget ftp://ftp.mcs.anl.gov/pub/darshan/releases/darshan-3.3.1.tar.gz
@@ -29,5 +34,6 @@ WORKDIR /dxt-explorer
 RUN pip install --upgrade pip
 RUN pip install -r requirements.txt
 RUN Rscript install-r-libraries.R
+RUN pip install .
 
-ENTRYPOINT ["python3", "explore.py"]
+ENTRYPOINT ["dxt-explorer"]

MANIFEST.in

@@ -2,4 +2,5 @@ include requirements.txt
 include dxt-explorer.png
 include explorer/*.*
 include explorer/plots/*.R
-include explorer/plots/*.png
+include explorer/plots/*.png
+include explorer/plots/*.html

docs/source/exploring.rst

@@ -42,11 +42,3 @@ DXT Explorer will generate by default a ``explore.html`` file with an interactiv
    2021-10-05 03:21:54,657 explore - INFO - SUCCESS
 
 You can find a couple of interactive examples of DXT traces collected from FLASH, E2E, and OpenPMD in the `companion repository <https://jeanbez.gitlab.io/pdsw-2021>`_ for our PDSW'21 paper.
-
-.. note::
-
-   If you do not want to install DXT Explorer but rather prefer to run it as a standalone script, you can use the following command to launch it. However, remember that you are still required to install all dependencies.
-
-   .. code-block:: bash
-   
-      python3 explore/dxt.py YOUR-DXT-TRACE.darshan