Skip to content

Commit

Permalink
update susier env
Browse files Browse the repository at this point in the history
  • Loading branch information
gmauro committed Mar 2, 2024
1 parent 4e27681 commit 09a1691
Show file tree
Hide file tree
Showing 2 changed files with 13 additions and 5 deletions.
14 changes: 9 additions & 5 deletions Dockerfile
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
FROM condaforge/mambaforge:latest
LABEL io.github.snakemake.containerized="true"
LABEL io.github.snakemake.conda_env_hash="28c328bc05583c80dbef9948c2ab8c01c4c5f9f5b7d2411314f06e0b3472cfd0"
LABEL io.github.snakemake.conda_env_hash="1c33449d56ebf06cf66cbf4d3d8a2594c24363df8d478ed89e9c953780fb768b"

ENV DEBIAN_FRONTEND=noninteractive
RUN apt update && apt install -y build-essential libz-dev && rm -rf /var/lib/apt/lists/*
Expand Down Expand Up @@ -82,8 +82,12 @@ COPY workflow/envs/plink2.yml /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/envir

# Conda environment:
# source: workflow/envs/susier.yml
# prefix: /conda-envs/68f405a25f9c3bf3528a1b7b39978bcc
# prefix: /conda-envs/be316e9967fe3846694829a2f8f63147
# name: susier
# channels:
# - r
# - conda-forge
# - defaults
# dependencies:
# - r-base==4.3.0
# - r-susier==0.12.35
Expand All @@ -103,8 +107,8 @@ COPY workflow/envs/plink2.yml /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/envir
# - scipy==1.9.3
# - pandas==1.5.3
# - pip
RUN mkdir -p /conda-envs/68f405a25f9c3bf3528a1b7b39978bcc
COPY workflow/envs/susier.yml /conda-envs/68f405a25f9c3bf3528a1b7b39978bcc/environment.yaml
RUN mkdir -p /conda-envs/be316e9967fe3846694829a2f8f63147
COPY workflow/envs/susier.yml /conda-envs/be316e9967fe3846694829a2f8f63147/environment.yaml

# Conda environment:
# source: workflow/scripts/gwaspipe/environment.yml
Expand Down Expand Up @@ -137,6 +141,6 @@ RUN mamba env create --prefix /conda-envs/6e056d31662ab0bd2fd3fba49416042f --fil
mamba env create --prefix /conda-envs/a2826e2ef1005ed23bdbb3539321f7e9 --file /conda-envs/a2826e2ef1005ed23bdbb3539321f7e9/environment.yaml && \
mamba env create --prefix /conda-envs/a9b8ccc53333def92898879edc6df0ca --file /conda-envs/a9b8ccc53333def92898879edc6df0ca/environment.yaml && \
mamba env create --prefix /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05 --file /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/environment.yaml && \
mamba env create --prefix /conda-envs/68f405a25f9c3bf3528a1b7b39978bcc --file /conda-envs/68f405a25f9c3bf3528a1b7b39978bcc/environment.yaml && \
mamba env create --prefix /conda-envs/be316e9967fe3846694829a2f8f63147 --file /conda-envs/be316e9967fe3846694829a2f8f63147/environment.yaml && \
mamba env create --prefix /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e --file /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e/environment.yaml && \
mamba clean --all -y
4 changes: 4 additions & 0 deletions workflow/envs/susier.yml
Original file line number Diff line number Diff line change
@@ -1,4 +1,8 @@
name: susier
channels:
- r
- conda-forge
- defaults
dependencies:
- r-base==4.3.0
- r-susier==0.12.35
Expand Down

0 comments on commit 09a1691

Please sign in to comment.