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update Dockerfile
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gmauro committed Jan 3, 2025
1 parent ff0ea7f commit 32d2b55
Showing 1 changed file with 19 additions and 1 deletion.
20 changes: 19 additions & 1 deletion Dockerfile
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
FROM condaforge/mambaforge:latest
LABEL io.github.snakemake.containerized="true"
LABEL io.github.snakemake.conda_env_hash="b1774004d6cfecbf313f26928d0220184bcc986872b153a53beac1173dc12ee9"
LABEL io.github.snakemake.conda_env_hash="baeaa25c333875fb8e8bda73b8af453c2ecc262cf0834542e82d08b3a14abf44"

ENV DEBIAN_FRONTEND=noninteractive
RUN apt update && apt install -y build-essential libz-dev && rm -rf /var/lib/apt/lists/*
Expand Down Expand Up @@ -34,6 +34,23 @@ COPY workflow/envs/bgzip_tabix.yaml /conda-envs/6e056d31662ab0bd2fd3fba49416042f
RUN mkdir -p /conda-envs/a160f42d06f9d24b41c5cbece52b682d
COPY workflow/envs/create_report_table.yaml /conda-envs/a160f42d06f9d24b41c5cbece52b682d/environment.yaml

# Conda environment:
# source: workflow/envs/filtering.yaml
# prefix: /conda-envs/31fc19a9498faffb09aa18f9246db95e
# name: filter_infoscore
# channels:
# - conda-forge
# - defaults
# dependencies:
# - python=3.11
# - pip==24.0
# - pip:
# - click==8.1.7
# - pandas==2.2
# - pyarrow==16.0
RUN mkdir -p /conda-envs/31fc19a9498faffb09aa18f9246db95e
COPY workflow/envs/filtering.yaml /conda-envs/31fc19a9498faffb09aa18f9246db95e/environment.yaml

# Conda environment:
# source: workflow/scripts/gwaspipe/environment.yml
# prefix: /conda-envs/1f62a09615f902ba65d1d0a9aee3d4aa
Expand Down Expand Up @@ -61,5 +78,6 @@ COPY workflow/scripts/gwaspipe/environment.yml /conda-envs/1f62a09615f902ba65d1d

RUN mamba env create --prefix /conda-envs/6e056d31662ab0bd2fd3fba49416042f --file /conda-envs/6e056d31662ab0bd2fd3fba49416042f/environment.yaml && \
mamba env create --prefix /conda-envs/a160f42d06f9d24b41c5cbece52b682d --file /conda-envs/a160f42d06f9d24b41c5cbece52b682d/environment.yaml && \
mamba env create --prefix /conda-envs/31fc19a9498faffb09aa18f9246db95e --file /conda-envs/31fc19a9498faffb09aa18f9246db95e/environment.yaml && \
mamba env create --prefix /conda-envs/1f62a09615f902ba65d1d0a9aee3d4aa --file /conda-envs/1f62a09615f902ba65d1d0a9aee3d4aa/environment.yaml && \
mamba clean --all -y

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