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update container
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gmauro committed Apr 3, 2024
1 parent 93f14fb commit a88893f
Showing 1 changed file with 1 addition and 23 deletions.
24 changes: 1 addition & 23 deletions Dockerfile
Original file line number Diff line number Diff line change
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FROM condaforge/mambaforge:latest
LABEL io.github.snakemake.containerized="true"
LABEL io.github.snakemake.conda_env_hash="88db0b1103f13c7ac73a5b0a6f1ec8650dcb4159cdf95fbe3c11b4d2bd29e34c"
LABEL io.github.snakemake.conda_env_hash="08e089460d2f8c8a5a638f4c3b6ea704a1036e627e6eb362116e18c0404bdc69"

ENV DEBIAN_FRONTEND=noninteractive
RUN apt update && apt install -y build-essential libz-dev && rm -rf /var/lib/apt/lists/*
Expand Down Expand Up @@ -34,27 +34,6 @@ COPY workflow/envs/bgzip_tabix.yaml /conda-envs/6e056d31662ab0bd2fd3fba49416042f
RUN mkdir -p /conda-envs/a160f42d06f9d24b41c5cbece52b682d
COPY workflow/envs/create_inflation_factors_table.yaml /conda-envs/a160f42d06f9d24b41c5cbece52b682d/environment.yaml

# Conda environment:
# source: workflow/envs/ldsc.yaml
# prefix: /conda-envs/9fdf8a7c84ff129c8967eb5848ece5ab
# name: ldsc
# channels:
# - conda-forge
# - bioconda
# dependencies:
# - python=2.7
# - bitarray=0.8
# - nose=1.3
# - pybedtools=0.7
# - ldsc==1.0.1
# - pip
# - pip:
# - scipy==0.18
# - pandas==0.20
# - numpy==1.16
RUN mkdir -p /conda-envs/9fdf8a7c84ff129c8967eb5848ece5ab
COPY workflow/envs/ldsc.yaml /conda-envs/9fdf8a7c84ff129c8967eb5848ece5ab/environment.yaml

# Conda environment:
# source: workflow/envs/plink-pandas.yml
# prefix: /conda-envs/a9b8ccc53333def92898879edc6df0ca
Expand Down Expand Up @@ -138,7 +117,6 @@ COPY workflow/scripts/gwaspipe/environment.yml /conda-envs/d3af165ce1ac53aefab55

RUN mamba env create --prefix /conda-envs/6e056d31662ab0bd2fd3fba49416042f --file /conda-envs/6e056d31662ab0bd2fd3fba49416042f/environment.yaml && \
mamba env create --prefix /conda-envs/a160f42d06f9d24b41c5cbece52b682d --file /conda-envs/a160f42d06f9d24b41c5cbece52b682d/environment.yaml && \
mamba env create --prefix /conda-envs/9fdf8a7c84ff129c8967eb5848ece5ab --file /conda-envs/9fdf8a7c84ff129c8967eb5848ece5ab/environment.yaml && \
mamba env create --prefix /conda-envs/a9b8ccc53333def92898879edc6df0ca --file /conda-envs/a9b8ccc53333def92898879edc6df0ca/environment.yaml && \
mamba env create --prefix /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05 --file /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/environment.yaml && \
mamba env create --prefix /conda-envs/be316e9967fe3846694829a2f8f63147 --file /conda-envs/be316e9967fe3846694829a2f8f63147/environment.yaml && \
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