update Dockerfile

Dockerfile

@@ -1,9 +1,6 @@
 FROM condaforge/mambaforge:latest
 LABEL io.github.snakemake.containerized="true"
-LABEL io.github.snakemake.conda_env_hash="1284763b652aae190bedccdf7682471d096434a157059bdedbaca9c3459f12cf"
-
-ENV DEBIAN_FRONTEND=noninteractive
-RUN apt update && apt install -y build-essential libz-dev rsync && rm -rf /var/lib/apt/lists/*
+LABEL io.github.snakemake.conda_env_hash="baeaa25c333875fb8e8bda73b8af453c2ecc262cf0834542e82d08b3a14abf44"
 
 # Step 1: Retrieve conda environments
 
@@ -35,60 +32,21 @@ RUN mkdir -p /conda-envs/a160f42d06f9d24b41c5cbece52b682d
 COPY workflow/envs/create_report_table.yaml /conda-envs/a160f42d06f9d24b41c5cbece52b682d/environment.yaml
 
 # Conda environment:
-#   source: workflow/envs/plink-pandas.yml
-#   prefix: /conda-envs/a9b8ccc53333def92898879edc6df0ca
-#   name: plink-pandas
-#   dependencies:
-#     - bioconda::plink=1.90*
-#     - bioconda::tabix=1.11
-#     - python=3.11.*
-#     - numpy
-#     - scipy
-#     - pandas
-#     - pip
-RUN mkdir -p /conda-envs/a9b8ccc53333def92898879edc6df0ca
-COPY workflow/envs/plink-pandas.yml /conda-envs/a9b8ccc53333def92898879edc6df0ca/environment.yaml
-
-# Conda environment:
-#   source: workflow/envs/plink2.yml
-#   prefix: /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05
-#   name: plink2
-#   channels:
-#     - defaults
-#   dependencies:
-#     - bioconda::plink2==2.00a5
-RUN mkdir -p /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05
-COPY workflow/envs/plink2.yml /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/environment.yaml
-
-# Conda environment:
-#   source: workflow/envs/susier.yml
-#   prefix: /conda-envs/be316e9967fe3846694829a2f8f63147
-#   name: susier
+#   source: workflow/envs/filter_infoscore.yaml
+#   prefix: /conda-envs/31fc19a9498faffb09aa18f9246db95e
+#   name: filter_infoscore
 #   channels:
-#     - r
 #     - conda-forge
 #     - defaults
 #   dependencies:
-#     - r-base==4.3.0
-#     - r-susier==0.12.35
-#     - r-tidyverse==2.0.0
-#     - r-dplyr==1.1.2
-#     - r-stringr==1.5.0
-#     - r-purrr==1.0.1
-#     - r-glue==1.6.2
-#     - r-ggplot2==3.4.2
-#     - r-ggpubr==0.6.0
-#     - r-data.table==1.14.8
-#     - r-rcpp==1.0.*
-#     - r-rcppeigen==0.3.3.*
-#     - r-markdown==1.10
-#     - r-rlog==0.1.0
-#     - numpy==1.24.3
-#     - scipy==1.9.3
-#     - pandas==1.5.3
-#     - pip
-RUN mkdir -p /conda-envs/be316e9967fe3846694829a2f8f63147
-COPY workflow/envs/susier.yml /conda-envs/be316e9967fe3846694829a2f8f63147/environment.yaml
+#     - python=3.11
+#     - pip==24.0
+#     - pip:
+#         - click==8.1.7
+#         - pandas==2.2
+#         - pyarrow==16.0
+RUN mkdir -p /conda-envs/31fc19a9498faffb09aa18f9246db95e
+COPY workflow/envs/filter_infoscore.yaml /conda-envs/31fc19a9498faffb09aa18f9246db95e/environment.yaml
 
 # Conda environment:
 #   source: workflow/scripts/gwaspipe/environment.yml
@@ -117,8 +75,6 @@ COPY workflow/scripts/gwaspipe/environment.yml /conda-envs/1f62a09615f902ba65d1d
 
 RUN mamba env create --prefix /conda-envs/6e056d31662ab0bd2fd3fba49416042f --file /conda-envs/6e056d31662ab0bd2fd3fba49416042f/environment.yaml && \
     mamba env create --prefix /conda-envs/a160f42d06f9d24b41c5cbece52b682d --file /conda-envs/a160f42d06f9d24b41c5cbece52b682d/environment.yaml && \
-    mamba env create --prefix /conda-envs/a9b8ccc53333def92898879edc6df0ca --file /conda-envs/a9b8ccc53333def92898879edc6df0ca/environment.yaml && \
-    mamba env create --prefix /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05 --file /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/environment.yaml && \
-    mamba env create --prefix /conda-envs/be316e9967fe3846694829a2f8f63147 --file /conda-envs/be316e9967fe3846694829a2f8f63147/environment.yaml && \
+    mamba env create --prefix /conda-envs/31fc19a9498faffb09aa18f9246db95e --file /conda-envs/31fc19a9498faffb09aa18f9246db95e/environment.yaml && \
     mamba env create --prefix /conda-envs/1f62a09615f902ba65d1d0a9aee3d4aa --file /conda-envs/1f62a09615f902ba65d1d0a9aee3d4aa/environment.yaml && \
     mamba clean --all -y