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hubmapconsortium · Jan 15, 2025 · 61f2052 · 61f2052
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diff --git a/NOTES.md b/NOTES.md
@@ -6,9 +6,9 @@ Release Notes
 
 |Ontology|Version|
 | :---: | :---: |
+|CL|2025-01-08|
 |UBERON|2024-11-25|
-|CL|2024-09-26|
-|PCL|2024-07-11|
+|PCL|2025-01-08|
 
 ### ASCT+b Tables
 

diff --git a/docs/Anatomical_Systems/README.md b/docs/Anatomical_Systems/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2025-01-08)
+ASCT+B Validation Reports for Anatomical_Systems (2025-01-15)
 =============================================================
 
 Table of contents

diff --git a/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf b/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf
diff --git a/docs/Anatomical_Systems/graph.md b/docs/Anatomical_Systems/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2025-01-08)
+ASCT+B Validation Reports for Anatomical_Systems (2025-01-15)
 =============================================================
 
 # ASCT+B as Graph

diff --git a/docs/Blood/README.md b/docs/Blood/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2025-01-08)
+ASCT+B Validation Reports for Blood (2025-01-15)
 ================================================
 
 Table of contents
@@ -140,7 +140,7 @@ In the case of the CT-CT relationship, for each couple of terms, we verify for _
 
 |    | row_number                                                                                                               | s                                                       | slabel                                                | user_slabel                       | o                                                       | olabel                | user_olabel              |   deltaIC |
 |----|--------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------|-------------------------------------------------------|-----------------------------------|---------------------------------------------------------|-----------------------|--------------------------|-----------|
-|  0 | [20](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |   11.2307 |
+|  0 | [20](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |   11.2273 |
 |  5 | [16](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=16:16) | [CL:0002394](http://purl.obolibrary.org/obo/CL_0002394) | CD141-positive myeloid dendritic cell                 | dendritic cell type 1 (DC1)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |  nan      |
 |  7 | [17](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=17:17) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell                  | dendritic cell type 2 (DC2)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |  nan      |
 |  9 | [18](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=18:18) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell                  | dendritic cell type 3 (DC3)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |  nan      |

diff --git a/docs/Blood/assets/ccf_Blood_graph.pdf b/docs/Blood/assets/ccf_Blood_graph.pdf
diff --git a/docs/Blood/class_Blood_log.tsv b/docs/Blood/class_Blood_log.tsv
@@ -1,5 +1,5 @@
 row_number	s	slabel	user_slabel	o	olabel	user_olabel	deltaIC
-20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	11.230714420680016
+20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	11.227346996294116
 12	CL:0000816	immature B cell	immature B cell	UBERON:0000178	Blood	Blood	
 13	CL:0000787	memory B cell	memory B cell	UBERON:0000178	Blood	Blood	
 14	CL:0000788	naive B cell	naive B cell	UBERON:0000178	Blood	Blood	

diff --git a/docs/Blood/graph.md b/docs/Blood/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2025-01-08)
+ASCT+B Validation Reports for Blood (2025-01-15)
 ================================================
 
 # ASCT+B as Graph

diff --git a/docs/Blood_vasculature/README.md b/docs/Blood_vasculature/README.md
diff --git a/docs/Blood_vasculature/assets/ccf_Blood_vasculature_graph.pdf b/docs/Blood_vasculature/assets/ccf_Blood_vasculature_graph.pdf
diff --git a/docs/Blood_vasculature/class_Blood_vasculature_log.tsv b/docs/Blood_vasculature/class_Blood_vasculature_log.tsv
diff --git a/docs/Blood_vasculature/graph.md b/docs/Blood_vasculature/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood_vasculature (2025-01-08)
+ASCT+B Validation Reports for Blood_vasculature (2025-01-15)
 ============================================================
 
 # ASCT+B as Graph

diff --git a/docs/Bone-Marrow/README.md b/docs/Bone-Marrow/README.md
diff --git a/docs/Bone-Marrow/assets/ccf_Bone-Marrow_graph.pdf b/docs/Bone-Marrow/assets/ccf_Bone-Marrow_graph.pdf
diff --git a/docs/Bone-Marrow/class_Bone-Marrow_log.tsv b/docs/Bone-Marrow/class_Bone-Marrow_log.tsv
@@ -1,9 +1,9 @@
 row_number	s	slabel	user_slabel	o	olabel	user_olabel	deltaIC
-19	CL:0000990	conventional dendritic cell	dendritic cell type 1	CL:0001056	dendritic cell, human	dendritic cell	22.780260539628415
-20	CL:0000990	conventional dendritic cell	dendritic cell type 2	CL:0001056	dendritic cell, human	dendritic cell	22.780260539628415
-23	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell	CL:0001056	dendritic cell, human	dendritic cell	11.230714420680016
-39	CL:0000839	myeloid lineage restricted progenitor cell	Myeloid progenitor	CL:0000576	monocyte	monocyte	6.305365436379503
-33	CL:0000037	hematopoietic stem cell	hemopoietic stem cell	CL:0000837	hematopoietic multipotent progenitor cell	hemopoietic stem cell/multipotent progenitor 	0.5557800133896933
+19	CL:0000990	conventional dendritic cell	dendritic cell type 1	CL:0001056	dendritic cell, human	dendritic cell	22.927194134038274
+20	CL:0000990	conventional dendritic cell	dendritic cell type 2	CL:0001056	dendritic cell, human	dendritic cell	22.927194134038274
+23	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell	CL:0001056	dendritic cell, human	dendritic cell	11.227346996294116
+39	CL:0000839	myeloid lineage restricted progenitor cell	Myeloid progenitor	CL:0000576	monocyte	monocyte	5.958680514592871
+33	CL:0000037	hematopoietic stem cell	hemopoietic stem cell	CL:0000837	hematopoietic multipotent progenitor cell	hemopoietic stem cell/multipotent progenitor 	0.5779734340704294
 12	CL:0000817	precursor B cell	precursor B cell	UBERON:0002371	Bone marrow	Bone marrow	
 13	CL:0000816	immature B cell	immature B cell	UBERON:0002371	Bone marrow	Bone marrow	
 14	CL:0000787	memory B cell	memory B cell	UBERON:0002371	Bone marrow	Bone marrow	

diff --git a/docs/Bone-Marrow/graph.md b/docs/Bone-Marrow/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Bone-Marrow (2025-01-08)
+ASCT+B Validation Reports for Bone-Marrow (2025-01-15)
 ======================================================
 
 # ASCT+B as Graph

diff --git a/docs/Brain/Brain_AS_CT_strict_log.tsv b/docs/Brain/Brain_AS_CT_strict_log.tsv
@@ -136,15 +136,15 @@ PCL:0051264	MGE_263 medial ganglionic eminence derived interneuron (Hsap)	MGE_26
 PCL:0051265	LLC_264 chandelier cell (Hsap)	LLC_264	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	422
 PCL:0051266	LLC_265 chandelier cell (Hsap)	LLC_265	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	423
 PCL:0051267	LLC_266 chandelier cell (Hsap)	LLC_266	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	424
-PCL:0051268	LLC_267 CNS interneuron (Hsap)	LLC_267	UBERON:0000956	cerebral cortex	cerebral cortex	425
-PCL:0051269	LLC_268 CNS interneuron (Hsap)	LLC_268	UBERON:0002421	hippocampal formation	hippocampal gyrus (formation)	426
-PCL:0051270	LLC_269 CNS interneuron (Hsap)	LLC_269	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	427
-PCL:0051271	LLC_270 CNS interneuron (Hsap)	LLC_270	UBERON:0000956	cerebral cortex	cerebral cortex	428
-PCL:0051272	LLC_271 CNS interneuron (Hsap)	LLC_271	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	429
-PCL:0051273	LLC_272 CNS interneuron (Hsap)	LLC_272	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	430
-PCL:0051274	LLC_273 CNS interneuron (Hsap)	LLC_273	UBERON:0000955	brain	brain	431
-PCL:0051275	LLC_274 CNS interneuron (Hsap)	LLC_274	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	432
-PCL:0051276	LLC_275 CNS interneuron (Hsap)	LLC_275	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	433
+PCL:0051268	LLC_267 interneuron (Hsap)	LLC_267	UBERON:0000956	cerebral cortex	cerebral cortex	425
+PCL:0051269	LLC_268 interneuron (Hsap)	LLC_268	UBERON:0002421	hippocampal formation	hippocampal gyrus (formation)	426
+PCL:0051270	LLC_269 interneuron (Hsap)	LLC_269	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	427
+PCL:0051271	LLC_270 interneuron (Hsap)	LLC_270	UBERON:0000956	cerebral cortex	cerebral cortex	428
+PCL:0051272	LLC_271 interneuron (Hsap)	LLC_271	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	429
+PCL:0051273	LLC_272 interneuron (Hsap)	LLC_272	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	430
+PCL:0051274	LLC_273 interneuron (Hsap)	LLC_273	UBERON:0000955	brain	brain	431
+PCL:0051275	LLC_274 interneuron (Hsap)	LLC_274	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	432
+PCL:0051276	LLC_275 interneuron (Hsap)	LLC_275	UBERON:0019264	gray matter of forebrain	gray matter of forebrain	433
 PCL:0051298	URL_297 neuron (Hsap)	URL_297	UBERON:0001891	midbrain	midbrain (mesencephalon)	455
 PCL:0051302	CBI_301 cerebellar inhibitory GABAergic interneuron (Hsap)	CBI_301	UBERON:0000988	pons	pons	459
 PCL:0051309	URL_308 unipolar brush cell (Hsap)	URL_308	UBERON:0019263	gray matter of hindbrain	gray matter of hindbrain	466