fix links to CI #74

	name: CI

	on: [push, pull_request]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5
	matrix:
	python-version: ['3.8', '3.9', '3.10']

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	# - name: Add conda to system path
	# run: \|
	# # $CONDA is an environment variable pointing to the root of the miniconda directory
	# echo $CONDA/bin >> $GITHUB_PATH
	- uses: mamba-org/setup-micromamba@v1
	with:
	condarc: \|
	channels:
	- conda-forge
	- bioconda
	- defaults
	init-shell: bash
	environment-name: test-env
	create-args: >-
	python=${{ matrix.python-version }}
	simba>=1.1
	flake8
	pytest
	pytest-cov
	- name: Install SIMBA
	run: \|
	python -m pip install --upgrade pip
	# pip install -r requirements.txt
	pip install -e .
	shell: bash -el {0}
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	shell: bash -el {0}
	- name: Test with pytest
	run: \|
	pytest --cov
	shell: bash -el {0}
	- name: Coverage report
	run: \|
	bash <(curl -s https://codecov.io/bash)
	shell: bash -el {0}

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