Ci runs

.github/workflows/README.md

@@ -0,0 +1,62 @@
+# CI Workflows
+
+This repository contains several CI workflows designed for deployment in a self-hosted runner. Below is a description of each workflow and its purpose.
+
+## Workflows
+
+### `ci-build.yml` 
+**Trigger:** Automatically on every pull request or Manually
+
+- Builds the `depa-training-encfs`, `depa-training`, and other containers required for the COVID scenario.
+- Runs containers locally to perform preprocessing, save the model, and train the model.
+
+### `ci.yml`
+**Trigger:** Manually
+
+- Prepares data and model for deployment.
+- Creates Azure Storage and Key Vault if they do not already exist.
+- Imports data and model encryption keys with key release policies.
+- Encrypts the data and model.
+- Uploads the encrypted data and model to Azure Storage.
+- Deploys CCR on Azure Container Instances (ACI) and trains the model.
+
+### `ci-local.yml`
+**Trigger:** Manually
+
+- Pulls containers from Azure Container Registry (ACR).
+- Runs containers locally to perform preprocessing, save the model, and train the model.
+
+### `release.yml`
+**Trigger:** Release Event 
+
+- Builds the `depa-training-encfs`, `depa-training`, contract service container, and other containers required for the COVID scenario.
+- Pushes the built containers to ACR.
+
+### `contract-service.yml`
+**Trigger:** Manually
+
+- Builds the contract service container.
+- Deploys the contract service.
+
+## Steps to Deploy Self-Hosted Runner
+
+1. **Set up Recommended OIDC Authentication:**
+   - Follow the [official guide](https://learn.microsoft.com/en-us/azure/app-service/deploy-github-actions?tabs=openid%2Cpython%2Caspnetcore#set-up-a-github-actions-workflow-manually) to authenticate GitHub Actions with Azure services using the OIDC approach.
+
+2. **Assign Necessary Permissions:**
+   - For the service principal created during the above step (or an external one), assign the following permissions:
+     - Contributor
+     - Custom role with `Microsoft.Authorization/GetRoleAssignment` and `Microsoft.Authorization/CreateRoleAssignment`
+
+3. **Create a New Self-Hosted Runner:**
+   - Navigate to `Settings` > `Actions` > `Runners` in your GitHub repository.
+   - Create a "New self-hosted Runner".
+
+4. **Set Up the Azure VM:**
+   - Create an Azure VM with at least 16GB RAM, 4 CPUs, and 128GB SSD.
+   - Follow the instructions provided in the self-hosted runner setup to configure the action runner on your Azure VM.
+
+---
+
+By following these instructions, you can set up and utilize the CI workflows in your self-hosted runner to automate and manage the deployment processes for your projects.
+

.github/workflows/ci-build.yml

@@ -0,0 +1,60 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+# GitHub recommends pinning actions to a commit SHA.
+# To get a newer version, you will need to update the SHA.
+# You can also reference a tag or branch, but the action may change without warning.
+
+name: Build and Test Images
+
+on:
+  pull_request:
+    branches:
+      - main
+  workflow_dispatch:
+
+jobs:
+  build-and-test-image:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+
+      - name: Update submodules
+        run: git submodule update --init --recursive
+
+      - name: Set up Go
+        uses: actions/setup-go@v4
+        with:
+          go-version: '1.19.x'
+
+      - name: Install jq
+        run: sudo apt install -y jq
+
+      - name: Install make
+        run: sudo apt install make
+
+      - name: Install wheel
+        run: pip install wheel 
+
+      - name: Build encrypted filesystem artifacta, contract ledger client & depa-training container
+        run:  ci/build.sh
+
+      - name: Build container images
+        run: cd ${{ github.workspace }}/scenarios/covid && ./ci/build.sh
+
+      - name: Run pre-processing
+        run: cd ./scenarios/covid/deployment/docker && ./preprocess.sh
+
+      - name: Run model saving
+        run: cd ./scenarios/covid/deployment/docker && ./save-model.sh
+
+      - name: Run training
+        run: cd ./scenarios/covid/deployment/docker && ./train.sh
+

.github/workflows/ci-local.yml

@@ -9,24 +9,29 @@
 
 name: Deploy COVID scenario in Docker
 
-on: [workflow_dispatch]
+on: 
+  workflow_dispatch:
 
 env:
   CONTAINER_REGISTRY: ${{ vars.CONTAINER_REGISTRY }}
+  CONTAINER_REGISTRY_USERNAME: ${{ secrets.CONTAINER_REGISTRY_USERNAME }}
+  CONTAINER_REGISTRY_PASSWORD: ${{ secrets.CONTAINER_REGISTRY_ACCESS_TOKEN }}
 
 jobs:
   deploy-ccr-covid:
     runs-on: [self-hosted, linux, X64]
+
     steps:
       - uses: AutoModality/action-clean@v1
       - uses: actions/checkout@v3
 
       - name: Update submodules
         run: git submodule update --init --recursive
 
-      - name: Login to Docker Hub
-        uses: docker/login-action@v2
+      - name: Login to ACR
+        uses: docker/login-action@v3
         with:
+          registry: ${{ vars.CONTAINER_REGISTRY }} 
           username: ${{ secrets.CONTAINER_REGISTRY_USERNAME }}
           password: ${{ secrets.CONTAINER_REGISTRY_ACCESS_TOKEN }}
 
@@ -41,6 +46,6 @@ jobs:
 
       - name: Run model saving
         run: cd ./scenarios/covid/deployment/docker && ./save-model.sh
-        
+
       - name: Run training
         run: cd ./scenarios/covid/deployment/docker && ./train.sh

.github/workflows/ci.yml

@@ -21,6 +21,7 @@ env:
   CONTAINER_REGISTRY_USERNAME: ${{ secrets.CONTAINER_REGISTRY_USERNAME }}
   CONTAINER_REGISTRY_PASSWORD: ${{ secrets.CONTAINER_REGISTRY_ACCESS_TOKEN }}
   AZURE_RESOURCE_GROUP: ${{ vars.AZURE_RESOURCE_GROUP }}
+  AZURE_LOCATION: ${{ vars.AZURE_LOCATION }}
   AZURE_STORAGE_ACCOUNT_NAME: ${{ vars.AZURE_STORAGE_ACCOUNT_NAME }}
   AZURE_ICMR_CONTAINER_NAME: ${{ vars.AZURE_ICMR_CONTAINER_NAME }}
   AZURE_COWIN_CONTAINER_NAME: ${{ vars.AZURE_COWIN_CONTAINER_NAME }}
@@ -31,6 +32,11 @@ env:
   TOOLS_HOME: ${{ github.workspace }}/external/confidential-sidecar-containers/tools
   DATA_DIRECTORY: ${{ github.workspace}}/scenarios/covid/data
   CONTRACT_SERVICE_URL: ${{ vars.CONTRACT_SERVICE_URL }}
+
+
+permissions:
+  id-token: write
+  contents: read
 
 jobs:
   deploy-ccr-covid-aci:
@@ -55,11 +61,14 @@ jobs:
       - name: Log in with Azure
         uses: azure/login@v1
         with:
-          creds: '${{ secrets.AZURE_CREDENTIALS }}'
+          client-id: ${{ secrets.AZURE_CLIENT_ID }}
+          tenant-id: ${{ secrets.AZURE_TENANT_ID }}
+          subscription-id: ${{ secrets.AZURE_SUBSCRIPTION_ID }}
 
       - name: Login to Docker Hub
-        uses: docker/login-action@v2
+        uses: docker/login-action@v3
         with:
+          registry: ${{ vars.CONTAINER_REGISTRY }}
           username: ${{ secrets.CONTAINER_REGISTRY_USERNAME }}
           password: ${{ secrets.CONTAINER_REGISTRY_ACCESS_TOKEN }}
 
@@ -78,6 +87,12 @@ jobs:
       - name: Pull container images for generating policy
         run: cd ${{ github.workspace }}/ci && ./pull-containers.sh
 
+      - name: create storage and containers 
+        run: cd ${{ github.workspace }}/scenarios/covid/data && ./1-create-storage-containers.sh
+
+      - name: create azure key vault
+        run: cd ${{ github.workspace }}/scenarios/covid/data && ./2-create-akv.sh 
+
       - name: Import data and model encryption keys with key release policies
         run: cd ${{ github.workspace }}/scenarios/covid/data && ./3-import-keys.sh
 
@@ -88,7 +103,7 @@ jobs:
         run: cd ${{ github.workspace }}/scenarios/covid/data && ./5-upload-encrypted-data.sh
 
       - name: Run training
-        run: cd ${{ github.workspace }}/scenarios/covid/deployment/aci && ./deploy.sh -c ${{ github.event.inputs.contract }} -q ../../config/query_config.json -m ../../config/model_config.json
+        run: cd ${{ github.workspace }}/scenarios/covid/deployment/aci && ./deploy.sh -c ${{ github.event.inputs.contract }} -p ../../config/pipeline_config.json 
 
       - name: Dump training container logs
         run: sleep 200 && az container logs --name depa-training-covid --resource-group $AZURE_RESOURCE_GROUP --container-name depa-training
@@ -99,6 +114,9 @@ jobs:
       - name: Download and decrypt model
         run: cd ${{ github.workspace }}/scenarios/covid/data && ./6-download-decrypt-model.sh
 
+      - name: Clean up resource group and all resources 
+        run: az group delete --yes --name $AZURE_RESOURCE_GROUP
+
       - name: Cleanup data directory
         run: sudo rm -rf $DATA_DIRECTORY
         if: ${{ always() }}

scenarios/covid/data/1-create-storage-containers.sh

@@ -1,34 +1,66 @@
 #!/bin/bash
+#
+echo "Checking if resource group $AZURE_RESOURCE_GROUP exists..."
+RG_EXISTS=$(az group exists --name $AZURE_RESOURCE_GROUP)
 
-az group create \
-    --location westeurope \
-    --name $AZURE_RESOURCE_GROUP
-
-az storage account create \
-    --resource-group $AZURE_RESOURCE_GROUP \
-    --name $AZURE_STORAGE_ACCOUNT_NAME
-
-az storage container create \
-    --resource-group $AZURE_RESOURCE_GROUP \
-    --account-name $AZURE_STORAGE_ACCOUNT_NAME \
-    --name $AZURE_ICMR_CONTAINER_NAME 
-
-az storage container create \
-    --resource-group $AZURE_RESOURCE_GROUP \
-    --account-name $AZURE_STORAGE_ACCOUNT_NAME \
-    --name $AZURE_COWIN_CONTAINER_NAME 
-
-az storage container create \
-    --resource-group $AZURE_RESOURCE_GROUP \
-    --account-name $AZURE_STORAGE_ACCOUNT_NAME \
-    --name $AZURE_INDEX_CONTAINER_NAME 
-
-az storage container create \
-    --resource-group $AZURE_RESOURCE_GROUP \
-    --account-name $AZURE_STORAGE_ACCOUNT_NAME \
-    --name $AZURE_MODEL_CONTAINER_NAME 
-
-az storage container create \
-    --resource-group $AZURE_RESOURCE_GROUP \
-    --account-name $AZURE_STORAGE_ACCOUNT_NAME \
-    --name $AZURE_OUTPUT_CONTAINER_NAME 
+if [ "$RG_EXISTS" == "false" ]; then
+  echo "Resource group $AZURE_RESOURCE_GROUP does not exist. Creating it now..."
+  # Create the resource group
+  az group create --name $AZURE_RESOURCE_GROUP --location $AZURE_LOCATION
+else
+  echo "Resource group $AZURE_RESOURCE_GROUP already exists. Skipping creation."
+fi
+
+#echo "Check if storage account $STORAGE_ACCOUNT_NAME exists..."
+STORAGE_ACCOUNT_EXISTS=$(az storage account check-name --name $AZURE_STORAGE_ACCOUNT_NAME --query "nameAvailable" --output tsv)
+
+if [ "$STORAGE_ACCOUNT_EXISTS" == "true" ]; then
+  echo "Storage account $AZURE_STORAGE_ACCOUNT_NAME does not exist. Creating it now..."
+  az storage account create  --resource-group $AZURE_RESOURCE_GROUP  --name $AZURE_STORAGE_ACCOUNT_NAME
+else
+  echo "Storage account $AZURE_STORAGE_ACCOUNT_NAME exists"
+fi
+
+# Get the storage account key
+ACCOUNT_KEY=$(az storage account keys list --resource-group $AZURE_RESOURCE_GROUP --account-name $AZURE_STORAGE_ACCOUNT_NAME --query "[0].value" --output tsv)
+
+
+# Check if the ICMR container exists
+CONTAINER_EXISTS=$(az storage container exists --name $AZURE_ICMR_CONTAINER_NAME --account-name $AZURE_STORAGE_ACCOUNT_NAME --account-key $ACCOUNT_KEY --query "exists" --output tsv)
+
+if [ "$CONTAINER_EXISTS" == "false" ]; then
+  echo "Container $AZURE_ICMR_CONTAINER_NAME does not exist. Creating it now..."
+  az storage container create --resource-group $AZURE_RESOURCE_GROUP --account-name $AZURE_STORAGE_ACCOUNT_NAME --name $AZURE_ICMR_CONTAINER_NAME --account-key $ACCOUNT_KEY
+fi
+
+# Check if the COWIN container exists
+CONTAINER_EXISTS=$(az storage container exists --name $AZURE_COWIN_CONTAINER_NAME --account-name $AZURE_STORAGE_ACCOUNT_NAME --account-key $ACCOUNT_KEY --query "exists" --output tsv)
+
+if [ "$CONTAINER_EXISTS" == "false" ]; then
+  echo "Container $AZURE_COWIN_CONTAINER_NAME does not exist. Creating it now..."
+  az storage container create --resource-group $AZURE_RESOURCE_GROUP --account-name $AZURE_STORAGE_ACCOUNT_NAME --name $AZURE_COWIN_CONTAINER_NAME --account-key $ACCOUNT_KEY
+fi
+
+# Check if the INDEX container exists
+CONTAINER_EXISTS=$(az storage container exists --name $AZURE_INDEX_CONTAINER_NAME --account-name $AZURE_STORAGE_ACCOUNT_NAME --account-key $ACCOUNT_KEY --query "exists" --output tsv)
+
+if [ "$CONTAINER_EXISTS" == "false" ]; then
+  echo "Container $AZURE_INDEX_CONTAINER_NAME does not exist. Creating it now..."
+  az storage container create --resource-group $AZURE_RESOURCE_GROUP --account-name $AZURE_STORAGE_ACCOUNT_NAME --name $AZURE_INDEX_CONTAINER_NAME --account-key $ACCOUNT_KEY
+fi
+
+# Check if the MODEL container exists
+CONTAINER_EXISTS=$(az storage container exists --name $AZURE_MODEL_CONTAINER_NAME --account-name $AZURE_STORAGE_ACCOUNT_NAME --account-key $ACCOUNT_KEY --query "exists" --output tsv)
+
+if [ "$CONTAINER_EXISTS" == "false" ]; then
+  echo "Container $AZURE_MODEL_CONTAINER_NAME does not exist. Creating it now..."
+  az storage container create --resource-group $AZURE_RESOURCE_GROUP --account-name $AZURE_STORAGE_ACCOUNT_NAME --name $AZURE_MODEL_CONTAINER_NAME --account-key $ACCOUNT_KEY
+fi
+
+# Check if the OUTPUT container exists
+CONTAINER_EXISTS=$(az storage container exists --name $AZURE_OUTPUT_CONTAINER_NAME --account-name $AZURE_STORAGE_ACCOUNT_NAME --account-key $ACCOUNT_KEY --query "exists" --output tsv)
+
+if [ "$CONTAINER_EXISTS" == "false" ]; then
+  echo "Container $AZURE_OUTPUT_CONTAINER_NAME does not exist. Creating it now..."
+  az storage container create --resource-group $AZURE_RESOURCE_GROUP --account-name $AZURE_STORAGE_ACCOUNT_NAME --name $AZURE_OUTPUT_CONTAINER_NAME --account-key $ACCOUNT_KEY
+fi

scenarios/covid/data/2-create-akv.sh

@@ -2,17 +2,24 @@
 
 set -e 
 
-echo CREATING $AZURE_KEYVAULT_ENDPOINT in resouce group $AZURE_RESOURCE_GROUP
-echo $AZURE_RESOURCE_GROUP
-
+  echo CREATING $AZURE_KEYVAULT_ENDPOINT in resouce group $AZURE_RESOURCE_GROUP
+
 if [[ "$AZURE_KEYVAULT_ENDPOINT" == *".vault.azure.net" ]]; then 
-    # Create Azure key vault with RBAC authorization
     AZURE_AKV_RESOURCE_NAME=`echo $AZURE_KEYVAULT_ENDPOINT | awk '{split($0,a,"."); print a[1]}'`
-    az keyvault create --name $AZURE_AKV_RESOURCE_NAME --resource-group $AZURE_RESOURCE_GROUP --sku "Premium" --enable-rbac-authorization
-    # Assign RBAC roles to the resource owner so they can import keys
-    AKV_SCOPE=`az keyvault show --name $AZURE_AKV_RESOURCE_NAME --query id --output tsv`    
-    az role assignment create --role "Key Vault Crypto Officer" --assignee `az account show --query user.name --output tsv` --scope $AKV_SCOPE
-    az role assignment create --role "Key Vault Crypto User" --assignee `az account show --query user.name --output tsv` --scope $AKV_SCOPE
+    # Check if the Key Vault already exists
+    echo "Checking if Key Vault $KEY_VAULT_NAME exists..."
+    KEY_VAULT_EXISTS=$(az keyvault list --resource-group $AZURE_RESOURCE_GROUP --query "[?name=='$AZURE_AKV_RESOURCE_NAME'].name" --output tsv)
+    if [ -z "$KEY_VAULT_EXISTS" ]; then
+        echo "Key Vault $KEY_VAULT_NAME does not exist. Creating it now..."
+        # Create Azure key vault with RBAC authorization
+        az keyvault create --name $AZURE_AKV_RESOURCE_NAME --resource-group $AZURE_RESOURCE_GROUP --sku "Premium" --enable-rbac-authorization
+        # Assign RBAC roles to the resource owner so they can import keys
+        AKV_SCOPE=`az keyvault show --name $AZURE_AKV_RESOURCE_NAME --query id --output tsv`    
+        az role assignment create --role "Key Vault Crypto Officer" --assignee `az account show --query user.name --output tsv` --scope $AKV_SCOPE
+        az role assignment create --role "Key Vault Crypto User" --assignee `az account show --query user.name --output tsv` --scope $AKV_SCOPE
+    else
+	echo "Key Vault $AZURE_KEYVAULT_ENDPOINT exists"
+    fi
 else
     echo "Automated creation of key vaults is supported only for vaults"
-fi
+fi

scenarios/covid/deployment/aci/deploy.sh

@@ -140,13 +140,20 @@ echo $TMP > /tmp/aci-parameters.json
 
 echo Deploying training clean room...
 
-az group create \
-    --location westeurope \
-    --name $AZURE_RESOURCE_GROUP
+echo "Checking if resource group $AZURE_RESOURCE_GROUP exists..."
+RG_EXISTS=$(az group exists --name $AZURE_RESOURCE_GROUP)
+
+if [ "$RG_EXISTS" == "false" ]; then
+  echo "Resource group $AZURE_RESOURCE_GROUP does not exist. Creating it now..."
+  # Create the resource group
+  az group create --name $AZURE_RESOURCE_GROUP --location $AZURE_LOCATION
+else
+  echo "Resource group $AZURE_RESOURCE_GROUP already exists. Skipping creation."
+fi
 
 az deployment group create \
   --resource-group $AZURE_RESOURCE_GROUP \
   --template-file arm-template.json \
   --parameters @/tmp/aci-parameters.json
 
-echo Deployment complete. 
+echo Deployment complete.