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Update README.md
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istemi-bahceci authored Dec 21, 2016
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Expand Up @@ -43,6 +43,32 @@ Please note that the app runs on the port 3000 by default. To change the port th
var APP_PORT = 3000;
```

#### Running Tool in Developement Mode
In order to run a local instance of the tool in developement mode, please follow the steps below:

Firstly, navigate to PathwayMapper repository. In index.html file uncomment the line with base.css and comment the line with base.min.css:
```
<!--For debugging-->
<!--<link rel="stylesheet" href="bin/base.css" charset="utf-8">-->
<link rel="stylesheet" href="bin/base.min.css" charset="utf-8">
```

Similarly do the same for base.js and base.min.js file:
```
<!--For debugging-->
<!--<script src="bin/base.js"></script>-->
<script src="bin/base.min.js"></script>
```

After that run the tool with the following command:
```
sudo npm run debug-build
```

After tool runs, all of your changes on src folder will be reflected to tool that runs without need of re-deploying it.

Please note that the app runs on the port 3000 by default. To change the port follow the same steps in previous section.

### Adding Genes and Interactions

PathwayMapper allows creation of following node types:
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