Allow errors on notebooks #28
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| jobs: | |
| nikola_build: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: docker.io/firedrakeproject/firedrake-vanilla:2023-10 | |
| options: --user root | |
| name: "Deploy Nikola to GitHub Pages" | |
| steps: | |
| - name: Activate Firedrake virtual environment | |
| run: | | |
| . /home/firedrake/firedrake/bin/activate | |
| echo PATH=$PATH >> $GITHUB_ENV | |
| - name: Checkout icepack source | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: icepack/icepack | |
| path: icepack | |
| - name: Install icepack and dependencies | |
| run: | | |
| apt update && apt install -yq patchelf graphviz moreutils jq | |
| pip install git+https://github.com/icepack/Trilinos.git | |
| pip install git+https://github.com/icepack/pyrol.git | |
| pip install jupyter nbconvert netCDF4 | |
| pip install "Nikola[extras]" | |
| pip install --editable ./icepack | |
| - name: Create jupyter kernel | |
| run: python -m ipykernel install --user --name=firedrake | |
| - name: Checkout website source | |
| uses: actions/checkout@v2 | |
| with: | |
| path: website | |
| - name: Preparing | |
| working-directory: ./website | |
| run: | | |
| src_branch=$(python -c 'import conf; print(conf.GITHUB_SOURCE_BRANCH)') | |
| dest_branch=$(python -c 'import conf; print(conf.GITHUB_DEPLOY_BRANCH)') | |
| git remote add ghpages "https://x-access-token:${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY}.git" || true | |
| git fetch ghpages $dest_branch || true | |
| git checkout -b $dest_branch --track ghpages/$dest_branch || true | |
| git pull ghpages $dest_branch || true | |
| git checkout $src_branch | |
| printf '\n\nGITHUB_REMOTE_NAME = "ghpages"\nGITHUB_COMMIT_SOURCE = False\n' >> conf.py | |
| - name: Execute notebooks | |
| working-directory: ./website | |
| env: | |
| EARTHDATA_USERNAME: ${{ secrets.EARTHDATA_USERNAME }} | |
| EARTHDATA_PASSWORD: ${{ secrets.EARTHDATA_PASSWORD }} | |
| run: make all --jobs $(nproc --all) | |
| - name: Publish | |
| working-directory: ./website | |
| run: | | |
| nikola github_deploy |