DESCRIPTION

Package: simurg
Version: 0.2.1
Title: simurg: Simulate Bacterial Pangenomes
Description: This package is intended to simulate a bacterial pangenome, given
    an initial MRCA, a number of generations, a substitution rate, a gene gain and 
    gene loss rate, and a coalescent tree. Mutations are simulated according to a
    substitution matrix (neutral by default), and gene gain/loss rate resembling the
    Infinite Many Genes model.
Authors@R: c(
    person("Ignacio", "Ferres", email = "iferres@pasteur.edu.uy", role=c("aut","cre")),
    person("Gregorio", "Iraola", email = "giraola@pasteur.edu.uy", role = "aut"),
    person("Pablo", "Fresia", email = "pfresia@gmail.com", role = "aut")
    )
Maintainer: <iferres@pasteur.edu.uy>
Imports: 
  seqinr,
  phangorn,
  stats,
  reshape2,
  utils
Depends:
  R (>= 3.3.1),
  ape
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
ByteCompile: true
RoxygenNote: 6.1.1
Suggests: 
    testthat,
    knitr,
    rmarkdown
VignetteBuilder: knitr