Update R-CMD-check.yaml

.github/workflows/R-CMD-check.yaml

@@ -36,31 +36,31 @@ jobs:
 
     steps:
 
-      - name: Set R Library home on Linux
-        if: runner.os == 'Linux'
-        run: |
-          mkdir /__w/_temp/Library
-          echo ".libPaths('/__w/_temp/Library')" > ~/.Rprofile
-          
       - name: Checkout Repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Setup R from r-lib
-        if: runner.os != 'Linux'
         uses: r-lib/actions/setup-r@v2
         with:
+          use-public-rspm: true
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
 
       - name: Setup pandoc from r-lib
-        if: runner.os != 'Linux'
         uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-        shell: Rscript {0}
+      - name: Query dependencies from r-lib
+        uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - name: Query dependencies from r-lib (Linux)
+        if: runner.os == 'Linux' && runner.r == '4.3'
+        uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, any::covr, local::.
+          needs: website, coverage
 
       - name: Restore R package cache
         if: "!contains(github.event.head_commit.message, '/nocache') && runner.os != 'Linux'"
@@ -78,63 +78,52 @@ jobs:
           key: ${{ env.cache-version }}-${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('.github/depends.Rds') }}
           restore-keys: ${{ env.cache-version }}-${{ runner.os }}-r-${{ matrix.config.r }}-
 
-      - name: Install system dependencies
-        if: runner.os == 'ubuntu-22.04'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-        run: |
-          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-          sudo -s eval "$sysreqs"
-        
-      - name: Install R dependencies
-        run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-          remotes::install_cran("pkgdown")
-          remotes::install_cran("covr")
-        shell: Rscript {0}
-
       - name: Session info
         run: |
           options(width = 100)
           pkgs <- installed.packages()[, "Package"]
           sessioninfo::session_info(pkgs, include_base = TRUE)
         shell: Rscript {0}
 
-      - name: Run CMD check
-        env:
-          _R_CHECK_CRAN_INCOMING_: false
-          DISPLAY: 99.0
-        run: |
-          options(crayon.enabled = TRUE)
-          rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
-
-      - name: Reveal testthat details
-        if:  env.has_testthat == 'true'
-        run: find . -name testthat.Rout -exec cat '{}' ';'
+      - name: Run CMD check from r-lib
+        uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
 
       - name: Test coverage
-        if: github.ref == 'refs/heads/master' && env.run_covr == 'true' && runner.os == 'ubuntu-22.04'
+        if: github.ref == 'refs/heads/master' && runner.os == 'Linux' && runner.r == '4.3'
         run: |
-          covr::codecov(coverage = covr::package_coverage(type = "all"))
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
         shell: Rscript {0}
 
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
       - name: Upload check results
         if: failure()
-        uses: actions/upload-artifact@master
+        uses: actions/upload-artifact@v4
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
-
-      - name: Install package
-        if: github.ref == 'refs/heads/master' && runner.os == 'ubuntu-22.04' && runner.r == '4.3'
-        run: |
-          R CMD INSTALL .
-          git config --global user.name ${{secrets.GH_USER}}
-          git config --global user.email ${{secrets.GH_EMAIL}}
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package
 
-      - name: Deploy Pkgdown to branch
-        if: github.ref == 'refs/heads/master' && runner.os == 'ubuntu-22.04' && runner.r == '4.3'
-        run: pkgdown::deploy_to_branch(new_process = FALSE)
+      - name: Build with Pkgdown
+        if: github.ref == 'refs/heads/master' && runner.os == 'Linux' && runner.r == '4.3'
+        run: pkgdown::deploy_to_branch(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.ref == 'refs/heads/master' && runner.os == 'Linux' && runner.r == '4.3'
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs