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j1c committed Apr 1, 2024
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2 changes: 1 addition & 1 deletion _static/documentation_options.js
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4 changes: 2 additions & 2 deletions _static/scripts/bootstrap.js.LICENSE.txt
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/*!
* Bootstrap v5.2.3 (https://getbootstrap.com/)
* Copyright 2011-2022 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors)
* Bootstrap v5.3.2 (https://getbootstrap.com/)
* Copyright 2011-2023 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors)
* Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)
*/
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8 changes: 4 additions & 4 deletions _static/styles/bootstrap.css

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3 changes: 2 additions & 1 deletion _static/styles/pydata-sphinx-theme.css

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18 changes: 9 additions & 9 deletions _static/webpack-macros.html
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-->
{# Load FontAwesome icons #}
{% macro head_pre_icons() %}
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{% macro head_pre_assets() %}
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{% macro head_js_preload() %}
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<script src="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=ac02cc09edc035673794"></script>
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173 changes: 173 additions & 0 deletions committee/committee.md
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---
marp: true
theme: slides
size: 16:9
paginate: true
---

<style scoped>
p {
font-size: 24px;
}
</style>

# Thesis Committee Meeting

## Reserach Defense

## Jaewon Chung

_(he/him)_ - [NeuroData lab](https://neurodata.io/)
Johns Hopkins University
Department of Biomedical Engineering

![icon](../images/icons/mail.png) [_j1c@jhu.edu_](mailto:j1c@jhu.edu)
![icon](../images/icons/github.png) [_@j1c (Github)_](https://github.com/j1c)
![icon](../images/icons/twitter.png) [_@j1c (Twitter)_](https://twitter.com/j1c)

![bg right:45% w:450](../images/logos/nd_logo_small.png)

<!-- https://neurodata.io/talks/tathey1/23_06_12_thesis/pres.html#2 -->

---

# Outline

- Prior work
- **Connectome of an insect brain**
- Analysis of bilateral symmetry
- Matching neurons between brain hemispheres
- `graspologic` + `hyppo`
- Future work
- On the power of comparative connectomics
- Collaborative real-data investigations
- Graduation plan

---

## How to use these (and other) tools?

<div class="columns">
<div>

## [graspologic](https://github.com/microsoft/graspologic)

[![h:30](https://pepy.tech/badge/graspologic)](https://pepy.tech/project/graspologic) [![h:30](https://img.shields.io/github/stars/microsoft/graspologic?style=social)](https://github.com/microsoft/graspologic) [![h:30](https://img.shields.io/github/contributors/microsoft/graspologic)](https://github.com/microsoft/graspologic/graphs/contributors)

![w:450](../images/logos/graspologic-logo.svg)

</div>

<div>

## [hyppo](https://github.com/neurodata/hyppo)

[![h:30](https://pepy.tech/badge/hyppo)](https://pepy.tech/project/hyppo) [![h:30](https://img.shields.io/github/stars/neurodata/hyppo?style=social)](https://github.com/neurodata/hyppo) [![h:30](https://img.shields.io/github/contributors/neurodata/hyppo)](https://github.com/neurodata/hyppo/graphs/contributors)

![w:450](../images/logos/hyppo.jpeg)

</div>

</div>

---

# Outline

- Future work
- **Graduation plan**

---

# Summary of work so far

<style scoped>

ul,p {
font-size: 23px;
}
</style>

<div class="columns">
<div>

#### Manuscripts

- First author
- Heritability, in review at _Imaging Neuro_ (2024)
- Two-sample graph testing, _Stat_ (2022)
- Statistical Connectomics, _ARISA_ (2021)
- `graspologic`, JMLR (2019)
- Second author
- Indep. Testing in Time Series, _TMLR_ (2024)
- Causal Conditional DCorr, (2023)
- Multiscale Connectomics, (2022)
- Others
- Connectal Coding, _Neurobio_ (2019)
- SPORF, _JMLR_ (2019)
- 2 others published

</div>
<div>

#### Conference presentations

- OHBM (x3)
- SfN (x3)
- Neuromatch (x2)
- NeurIPS (x1)

#### Invited Lectures & Talks

- JSM, 2023
- Advanced Graph Analytics Workshop (JHU), 2023
- OHBM, 2019

#### Awards

- BRAIN Initiative Trainee Highlight Award
- AWS Research Credit Grants (x2)

</div>
</div>

---

# Summary of work to be done

<style scoped>

ul,p {
font-size: 26px;
}
</style>

<div class="columns">
<div>

#### Manuscripts

- 1-2 collaborations with experimentalists (e.g., MANC connectome, behavior + larva connectome)
- "On the power of comparative connectomics"

</div>
<div>

#### Code

- Continue to develop `graspologic` and `hyppo`

</div>
</div>

<style scoped>
h2 {
justify-content: center;
text-align: center;
}
</style>

<br>
<br>

## Graduation $\approx$ April/May 2024
39 changes: 26 additions & 13 deletions coverpage.html
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<!DOCTYPE html>


<html lang="en" >
<html lang="en" data-content_root="" >

<head>
<meta charset="utf-8" />
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</script>

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<link href="_static/styles/pydata-sphinx-theme.css?digest=ac02cc09edc035673794" rel="stylesheet" />
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<link rel="stylesheet" type="text/css" href="_static/design-style.4045f2051d55cab465a707391d5b2007.min.css" />

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<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
<script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
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<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
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<div class="sidebar-primary-items__start sidebar-primary__section">
<div class="sidebar-primary-item">



<a class="navbar-brand logo" href="#">










<img src="_static/nd_logo.png" class="logo__image only-light" alt="Logo image"/>
<script>document.write(`<img src="_static/nd_logo.png" class="logo__image only-dark" alt="Logo image"/>`);</script>
<img src="_static/nd_logo.png" class="logo__image only-light" alt="Talks - Home"/>
<script>document.write(`<img src="_static/nd_logo.png" class="logo__image only-dark" alt="Talks - Home"/>`);</script>


</a></div>
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<li class="toctree-l1"><a class="reference external" href="https://j1c.github.io/talks/sfn22/sfn22.pdf">Statistical Modeling of Structural Connectomes Reveal High Genetic Influence on Connectivity (SfN 2022)</a></li>
<li class="toctree-l1"><a class="reference external" href="https://j1c.github.io/talks/ohbm19/ohbm19.pdf">Clustering Multi-Modal Connectomes (OHBM 2019)</a></li>
<li class="toctree-l1"><a class="reference external" href="https://j1c.github.io/talks/brain-2023/brain2023-poster.pdf">The Heritability of Human Connectomes: a Causal Modeling Analysis</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Others</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference external" href="https://j1c.github.io/talks/dbo/dbo.html">Doctoral Board Oral Exam</a></li>
<li class="toctree-l1"><a class="reference external" href="https://j1c.github.io/talks/committee/committee.html">Research Defence</a></li>
<li class="toctree-l1"><a class="reference external" href="https://j1c.github.io/talks/defense/defence.html">PhD Defense</a></li>
</ul>

</div>
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</button>



<script>
document.write(`
<button class="btn btn-sm navbar-btn theme-switch-button" title="light/dark" aria-label="light/dark" data-bs-placement="bottom" data-bs-toggle="tooltip">
Expand All @@ -341,6 +350,7 @@
`);
</script>


<script>
document.write(`
<button class="btn btn-sm navbar-btn search-button search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
Expand Down Expand Up @@ -381,6 +391,8 @@ <h1>Welcome! 👋<a class="headerlink" href="#welcome" title="Permalink to this
</div>
<div class="toctree-wrapper compound">
</div>
<div class="toctree-wrapper compound">
</div>
</section>

<script type="text/x-thebe-config">
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<footer class="prev-next-footer">
<!-- Previous / next buttons -->

<div class="prev-next-area">
</div>
</footer>
Expand All @@ -436,6 +448,7 @@ <h1>Welcome! 👋<a class="headerlink" href="#welcome" title="Permalink to this

<div class="footer-item">


<p class="copyright">

© Copyright 2023.
Expand All @@ -462,8 +475,8 @@ <h1>Welcome! 👋<a class="headerlink" href="#welcome" title="Permalink to this
</div>

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