Development #31
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| name: R CMD check ubuntu | |
| on: | |
| pull_request: | |
| branches: ["main", "development"] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| check-as-cran: | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} (${{ matrix.r-version }}) | |
| strategy: | |
| matrix: | |
| r-version: ['release'] | |
| os: ['ubuntu-latest'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: install R | |
| run: | | |
| # copied from https://cran.r-project.org/bin/linux/ubuntu/#get-5000-cran-packages | |
| # update indices | |
| sudo apt update -qq | |
| # install two helper packages we need | |
| sudo apt install --no-install-recommends software-properties-common dirmngr | |
| # add the signing key (by Michael Rutter) for these repos | |
| # To verify key, run gpg --show-keys /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc | |
| # Fingerprint: E298A3A825C0D65DFD57CBB651716619E084DAB9 | |
| wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc | |
| # add the R 4.0 repo from CRAN -- adjust 'focal' to 'groovy' or 'bionic' as needed | |
| sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" | |
| - name: install compiled packages | |
| run: | | |
| sudo add-apt-repository ppa:c2d4u.team/c2d4u4.0+ | |
| sudo apt install --no-install-recommends r-cran-rcpp | |
| sudo apt install --no-install-recommends r-cran-rcpparmadillo | |
| sudo apt install --no-install-recommends r-cran-rcppparallel | |
| sudo apt install --no-install-recommends r-cran-ggplot2 | |
| sudo apt install --no-install-recommends r-cran-tidyr | |
| sudo apt install --no-install-recommends r-cran-stringr | |
| sudo apt install --no-install-recommends r-cran-numderiv | |
| sudo apt install --no-install-recommends r-cran-rlang | |
| sudo apt install --no-install-recommends r-cran-mvtnorm | |
| sudo apt install --no-install-recommends r-cran-knitr | |
| sudo apt install --no-install-recommends r-cran-plotly | |
| sudo apt install --no-install-recommends r-cran-rmarkdown | |
| sudo apt install --no-install-recommends r-cran-rsolnp | |
| sudo apt install --no-install-recommends r-cran-lavaan | |
| sudo apt install --no-install-recommends r-cran-devtools | |
| sudo apt install --no-install-recommends r-cran-testthat | |
| sudo apt install --no-install-recommends r-cran-rcmdcheck | |
| sudo apt install --no-install-recommends r-cran-glmnet | |
| sudo apt install --no-install-recommends r-cran-ncvreg | |
| sudo apt install --no-install-recommends r-cran-regsem | |
| sudo apt install --no-install-recommends r-cran-lslx | |
| sudo apt install --no-install-recommends r-cran-matrix | |
| sudo apt install --no-install-recommends r-cran-openmx | |
| sudo apt install --no-install-recommends r-cran-rstan | |
| - name: Install dependencies not from apt | |
| run: | | |
| # specify library location (copied from teichert at https://stackoverflow.com/questions/32540919/library-is-not-writable) | |
| dir.create(Sys.getenv("R_LIBS_USER"), recursive = TRUE) # create personal library | |
| .libPaths(Sys.getenv("R_LIBS_USER")) # add to the path | |
| install.packages("ctsemOMX") # not available from apt install | |
| shell: Rscript {0} | |
| - name: Install lessSEM | |
| run: devtools::install(pkg = ".") | |
| shell: Rscript {0} | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(path = ".", args = "--no-manual", error_on = "warning") | |
| shell: Rscript {0} | |
| - name: lessTest | |
| run: | | |
| cd .. | |
| mkdir lessTest | |
| cd lessTest | |
| - uses: actions/checkout@v2 | |
| with: | |
| repository: 'jhorzek/lessTest' | |
| ref: 'development' | |
| - name: Extended tests | |
| run: | | |
| devtools::build(pkg = ".", binary = TRUE) | |
| rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning") | |
| shell: Rscript {0} |