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image is debian
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@jhorzek
jhorzek authored Jan 11, 2024
1 parent e5c1991 commit 45e2005
Showing 1 changed file with 25 additions and 39 deletions.
64 changes: 25 additions & 39 deletions .github/workflows/tst_ubuntu_san.yml
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Expand Up @@ -23,46 +23,32 @@ jobs:
with:
submodules: 'true'
- uses: r-lib/actions/setup-pandoc@v1
- name: Add R packages binary location
- name: install dependencies
run: |
# copied from https://cran.r-project.org/bin/linux/ubuntu/#get-5000-cran-packages
# update indices
sudo apt update -qq
# install two helper packages we need
sudo apt install -y --no-install-recommends software-properties-common dirmngr
# add the signing key (by Michael Rutter) for these repos
# To verify key, run gpg --show-keys /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
# Fingerprint: E298A3A825C0D65DFD57CBB651716619E084DAB9
wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
# add the R 4.0 repo from CRAN -- adjust 'focal' to 'groovy' or 'bionic' as needed
sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
- name: install compiled packages
run: |
sudo add-apt-repository ppa:c2d4u.team/c2d4u4.0+
sudo apt install -y --no-install-recommends r-cran-rcpp
sudo apt install -y --no-install-recommends r-cran-rcpparmadillo
sudo apt install -y --no-install-recommends r-cran-rcppparallel
sudo apt install -y --no-install-recommends r-cran-ggplot2
sudo apt install -y --no-install-recommends r-cran-tidyr
sudo apt install -y --no-install-recommends r-cran-stringr
sudo apt install -y --no-install-recommends r-cran-numderiv
sudo apt install -y --no-install-recommends r-cran-rlang
sudo apt install -y --no-install-recommends r-cran-mvtnorm
sudo apt install -y --no-install-recommends r-cran-knitr
sudo apt install -y --no-install-recommends r-cran-plotly
sudo apt install -y --no-install-recommends r-cran-rmarkdown
sudo apt install -y --no-install-recommends r-cran-rsolnp
sudo apt install -y --no-install-recommends r-cran-lavaan
sudo apt install -y --no-install-recommends r-cran-devtools
sudo apt install -y --no-install-recommends r-cran-testthat
sudo apt install -y --no-install-recommends r-cran-rcmdcheck
sudo apt install -y --no-install-recommends r-cran-glmnet
sudo apt install -y --no-install-recommends r-cran-ncvreg
sudo apt install -y --no-install-recommends r-cran-regsem
sudo apt install -y --no-install-recommends r-cran-lslx
sudo apt install -y --no-install-recommends r-cran-matrix
sudo apt install -y --no-install-recommends r-cran-openmx
sudo apt install -y --no-install-recommends r-cran-rstan
sudo apt install -y r-cran-rcpp
sudo apt install -y r-cran-rcpparmadillo
sudo apt install -y r-cran-rcppparallel
sudo apt install -y r-cran-ggplot2
sudo apt install -y r-cran-tidyr
sudo apt install -y r-cran-stringr
sudo apt install -y r-cran-numderiv
sudo apt install -y r-cran-rlang
sudo apt install -y r-cran-mvtnorm
sudo apt install -y r-cran-knitr
sudo apt install -y r-cran-plotly
sudo apt install -y r-cran-rmarkdown
sudo apt install -y r-cran-rsolnp
sudo apt install -y r-cran-lavaan
sudo apt install -y r-cran-devtools
sudo apt install -y r-cran-testthat
sudo apt install -y r-cran-rcmdcheck
sudo apt install -y r-cran-glmnet
sudo apt install -y r-cran-ncvreg
sudo apt install -y r-cran-regsem
sudo apt install -y r-cran-lslx
sudo apt install -y r-cran-matrix
sudo apt install -y r-cran-openmx
sudo apt install -y r-cran-rstan
- name: Run checks with extend compiler flags
run: |
withr::with_makevars(
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