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add some docs #1314

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add some docs

add some docs #1314

Workflow file for this run

.github/workflows/qlat.yml at 3ad6bd8
name: Build and Test
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
build_qlat_ubuntu:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Show info
run: |
whoami
pwd
type python3
type pip3
qcore/bin/organize-env-path.py
qcore/bin/show-env.py
- name: Install Ubuntu packages
run: |
sudo apt-get update
sudo apt-get install -y git bzip2 autoconf unzip
sudo apt-get install -y python3-full python3-dev
sudo apt-get install -y libopenmpi-dev ninja-build patchelf libeigen3-dev libgsl-dev zlib1g-dev libssl-dev libmpfr-dev
sudo apt-get install -y libfftw3-dev
# sudo apt-get install -y gnuplot texlive-metapost poppler-utils
#
sudo apt-get install -y latexmk texlive-latex-recommended texlive-latex-extra tex-gyre
- name: Build default
run: |
export num_proc=2
export prefix=~/qlat-build/default
./build.sh
- name: Show python venv
run: |
source ~/qlat-build/default/setenv.sh
pip3 install Sphinx myst-parser linkify-it-py
python3 -c "import sys; print(sys.version)"
python3 -c "import sys; print(sys.path)"
python3 -c "import numpy as np ; np.show_config()"
python3 -c 'import sys ; from mesonbuild import mesonmain; sys.exit(mesonmain.main())' --version
type ninja
ninja --version
- name: Build qlat-docs
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-docs.sh
[ -f /home/runner/qlat-build/default/qlat-docs/share/doc/qlat/html/index.html ]
- name: Testing pylib qlat
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-py.sh
- name: Testing qlat
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp.sh
- name: Check log diff
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-diff-new-logs.sh
- name: Update log
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-update-logs.sh
- name: Check error
run: |
! git diff | grep '^[+-]CHECK: '
- uses: actions/upload-artifact@v4
with:
name: qlat-docs
path: /home/runner/qlat-build/default/qlat-docs/share/doc
- uses: actions/configure-pages@v4
- uses: actions/upload-pages-artifact@v3
with:
path: /home/runner/qlat-build/default/qlat-docs/share/doc/qlat/html
deploy_docs:
# Add a dependency to the build job
needs: build_qlat_ubuntu
# Grant GITHUB_TOKEN the permissions required to make a Pages deployment
permissions:
pages: write # to deploy to Pages
id-token: write # to verify the deployment originates from an appropriate source
# Deploy to the github-pages environment
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
# Specify runner + deployment step
runs-on: ubuntu-latest
steps:
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v4
build_qlat_gpt_ubuntu:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Show info
run: |
whoami
pwd
type python3
type pip3
qcore/bin/organize-env-path.py
qcore/bin/show-env.py
- name: Install Ubuntu packages
run: |
sudo apt-get update
sudo apt-get install -y git bzip2 autoconf unzip
sudo apt-get install -y python3-full python3-dev
sudo apt-get install -y libopenmpi-dev ninja-build patchelf libeigen3-dev libgsl-dev zlib1g-dev libssl-dev libmpfr-dev
sudo apt-get install -y libfftw3-dev
sudo apt-get install -y clang libomp-dev
# sudo apt-get install -y gnuplot texlive-metapost poppler-utils
- name: Download dependencies
run: |
./scripts/download-core.sh
- name: Show versions for dependencies
run: |
./scripts/update-sources.sh
- name: Build default-gpt
run: |
export num_proc=2
export prefix=~/qlat-build/default
./build.sh default-gpt
- name: Show python venv
run: |
source ~/qlat-build/default/setenv.sh
python3 -c "import sys; print(sys.version)"
python3 -c "import sys; print(sys.path)"
python3 -c "import numpy as np ; np.show_config()"
python3 -c 'import sys ; from mesonbuild import mesonmain; sys.exit(mesonmain.main())' --version
type ninja
ninja --version
- name: Testing pylib qlat
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-py.sh
- name: Testing pylib qlat cps
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-py-cps.sh
- name: Testing pylib qlat gpt
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-py-gpt.sh
- name: Testing qlat
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp.sh
- name: Testing qlat grid
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp-grid.sh
- name: Check log diff
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-diff-new-logs.sh
- name: Update log
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-update-logs.sh
- name: Check error
run: |
! git diff | grep '^[+-]CHECK: ' # || echo "Check failed!"
- name: Build more packages Grid
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=2
export prefix=~/qlat-build/hadrons
./scripts/setenv.default.sh
USE_COMPILER=clang ./scripts/grid.avx2.sh
- name: Build more packages Hadrons
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=2
export prefix=~/qlat-build/hadrons
USE_COMPILER=clang ./scripts/hadrons.sh
- name: Build more packages Grid-tblum
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=2
export prefix=~/qlat-build/tblum
./scripts/setenv.default.sh
USE_COMPILER=clang ./scripts/grid-tblum.avx2.sh
- name: Build more packages Hadrons-tblum
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=2
export prefix=~/qlat-build/tblum
USE_COMPILER=clang ./scripts/hadrons-tblum.sh
- name: Check error for Build more packages
run: |
for path in $HOME/qlat-build/{default/gpt/lib/python3/dist-packages/{cgpt.so,gpt/__init__.py},{default/Grid-clehner,hadrons/Grid,tblum/Grid-tblum}/{lib/libGrid.a,bin/{grid-config,Mobius2p1fEOFA,Benchmark_dwf,Benchmark_dwf_fp32}},{hadrons/Hadrons,tblum/Hadrons-tblum}/{lib/libHadrons.a,bin/{hadrons-config,HadronsXmlRun,HadronsContractor}}} ; do if [ -e "$path" ] ; then echo "Build '$path' successfully." ; else echo "Failed to build '$path'." ; fi ; done
build_pip_ubuntu:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Show info
run: |
whoami
pwd
type python3
type pip3
qcore/bin/organize-env-path.py
qcore/bin/show-env.py
- name: Install Ubuntu packages
run: |
sudo apt-get update
sudo apt-get install -y git bzip2 autoconf unzip
sudo apt-get install -y python3-full python3-dev
sudo apt-get install -y libopenmpi-dev ninja-build patchelf libeigen3-dev libgsl-dev zlib1g-dev libssl-dev libmpfr-dev
sudo apt-get install -y libfftw3-dev
# sudo apt-get install -y gnuplot texlive-metapost poppler-utils
- name: Download dependencies
run: |
./scripts/download-core.sh
- name: Show versions for dependencies
run: |
./scripts/update-sources.sh
- name: Build dependencies
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/setenv.default.sh
./scripts/qcore.sh
./scripts/python-venv.sh
./scripts/python-pip-install.sh
./scripts/cuba.sh
./scripts/eigen.sh
./scripts/c-lime.sh
./scripts/hdf5.sh
- name: Show python venv
run: |
source ~/qlat-build/default/setenv.sh
pip3 install -vU pip build meson-python wheel
python3 -c "import sys; print(sys.version)"
python3 -c "import sys; print(sys.path)"
python3 -c "import numpy as np ; np.show_config()"
python3 -c 'import sys ; from mesonbuild import mesonmain; sys.exit(mesonmain.main())' --version
type ninja
ninja --version
- name: Build CPS
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qmp.sh
./scripts/qio.sh
./scripts/cps.sh
- name: Build Grid-clehner
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/grid-clehner.avx2.sh
- name: Build GPT
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/gpt.sh
- name: Install Qlattice
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-packages.sh
- name: Testing pylib qlat
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-py.sh
- name: Testing pylib qlat cps
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-py-cps.sh
- name: Testing qlat
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp.sh
- name: Testing qlat grid
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp-grid.sh
- name: Testing pylib qlat gpt
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qlat-examples-py-gpt.sh
- name: Check log diff
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-diff-new-logs.sh
- name: Update log
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-update-logs.sh
- name: Check error
run: |
! git diff | grep '^[+-]CHECK: ' # || echo "Check failed!"
- uses: actions/upload-artifact@v4
with:
name: qlat-packages
path: /home/runner/qlat-build/default/qlat-packages/packages/*.tar.gz
build_qlat_mac:
runs-on: macos-latest
steps:
- uses: actions/checkout@v4
- name: Show info
run: |
whoami
pwd
type python3
type pip3
qcore/bin/organize-env-path.py
qcore/bin/show-env.py
- name: Install Brew packages
run: |
# brew update
brew install llvm autoconf automake coreutils flock findutils pkg-config
brew install open-mpi ninja patchelf eigen gsl zlib openssl@3 mpfr
brew install fftw
# brew upgrade
- name: Build default
run: |
export num_proc=3
export prefix=~/qlat-build/default
./build.sh
- name: Show python venv
run: |
source ~/qlat-build/default/setenv.sh
python3 -c "import sys; print(sys.version)"
python3 -c "import sys; print(sys.path)"
python3 -c "import numpy as np ; np.show_config()"
python3 -c 'import sys ; from mesonbuild import mesonmain; sys.exit(mesonmain.main())' --version
type ninja
ninja --version
- name: Testing pylib qlat
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-py.sh
- name: Testing qlat
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp.sh
- name: Check log diff
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-diff-new-logs.sh
- name: Update log
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-update-logs.sh
- name: Check error
run: |
! git diff | grep '^[+-]CHECK: '
build_qlat_gpt_mac:
runs-on: macos-latest
steps:
- uses: actions/checkout@v4
- name: Show info
run: |
whoami
pwd
type python3
type pip3
qcore/bin/organize-env-path.py
qcore/bin/show-env.py
- name: Install Brew packages
run: |
# brew update
brew install llvm autoconf automake coreutils flock findutils pkg-config
brew install open-mpi ninja patchelf eigen gsl zlib openssl@3 mpfr
brew install fftw
# brew upgrade
- name: Download dependencies
run: |
./scripts/download-core.sh
- name: Show versions for dependencies
run: |
./scripts/update-sources.sh
- name: Build default-gpt
run: |
export num_proc=3
export prefix=~/qlat-build/default
./build.sh default-gpt
- name: Show python venv
run: |
source ~/qlat-build/default/setenv.sh
python3 -c "import sys; print(sys.version)"
python3 -c "import sys; print(sys.path)"
python3 -c "import numpy as np ; np.show_config()"
python3 -c 'import sys ; from mesonbuild import mesonmain; sys.exit(mesonmain.main())' --version
type ninja
ninja --version
- name: Testing pylib qlat
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-py.sh
- name: Testing pylib qlat cps
run: |
export num_proc=3
export prefix=~/qlat-build/default
# ./scripts/qlat-examples-py-cps.sh # CPS not working on Mac yet
- name: Testing pylib qlat gpt
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-py-gpt.sh
- name: Testing qlat
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp.sh
- name: Testing qlat grid
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp-grid.sh
- name: Check log diff
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-diff-new-logs.sh
- name: Update log
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-update-logs.sh
- name: Check error
run: |
! git diff | grep '^[+-]CHECK: ' # || echo "Check failed!"
- name: Build more packages Grid
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=3
export prefix=~/qlat-build/hadrons
./scripts/setenv.default.sh
USE_COMPILER=clang ./scripts/grid.gen16.sh
- name: Build more packages Hadrons
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=3
export prefix=~/qlat-build/hadrons
USE_COMPILER=clang ./scripts/hadrons.sh
- name: Build more packages Grid-tblum
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=3
export prefix=~/qlat-build/tblum
./scripts/setenv.default.sh
USE_COMPILER=clang ./scripts/grid-tblum.gen16.sh
- name: Build more packages Hadrons-tblum
run: |
source ~/qlat-build/default/setenv.sh
export num_proc=3
export prefix=~/qlat-build/tblum
USE_COMPILER=clang ./scripts/hadrons-tblum.sh
- name: Check error for Build more packages
run: |
for path in $HOME/qlat-build/{default/gpt/lib/python3/dist-packages/{cgpt.so,gpt/__init__.py},{default/Grid-clehner,hadrons/Grid,tblum/Grid-tblum}/{lib/libGrid.a,bin/{grid-config,Mobius2p1fEOFA,Benchmark_dwf,Benchmark_dwf_fp32}},{hadrons/Hadrons,tblum/Hadrons-tblum}/{lib/libHadrons.a,bin/{hadrons-config,HadronsXmlRun,HadronsContractor}}} ; do if [ -e "$path" ] ; then echo "Build '$path' successfully." ; else echo "Failed to build '$path'." ; fi ; done
build_pip_mac:
runs-on: macos-latest
steps:
- uses: actions/checkout@v4
- name: Show info
run: |
whoami
pwd
type python3
type pip3
qcore/bin/organize-env-path.py
qcore/bin/show-env.py
- name: Install Brew packages
run: |
# brew update
brew install llvm autoconf automake coreutils flock findutils pkg-config
brew install open-mpi ninja patchelf eigen gsl zlib openssl@3 mpfr
brew install fftw
# brew upgrade
- name: Download dependencies
run: |
export prefix=~/qlat-build/default
./scripts/download-core.sh
- name: Show versions for dependencies
run: |
export prefix=~/qlat-build/default
./scripts/update-sources.sh
- name: Build dependencies
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/setenv.default.sh
./scripts/qcore.sh
./scripts/python-venv.sh
./scripts/python-pip-install.sh
./scripts/cuba.sh
./scripts/eigen.sh
./scripts/c-lime.sh
./scripts/hdf5.sh
- name: Show python venv
run: |
source ~/qlat-build/default/setenv.sh
pip3 install -vU pip build meson-python wheel
python3 -c "import sys; print(sys.version)"
python3 -c "import sys; print(sys.path)"
python3 -c "import numpy as np ; np.show_config()"
python3 -c 'import sys ; from mesonbuild import mesonmain; sys.exit(mesonmain.main())' --version
type ninja
ninja --version
- name: Build CPS
run: |
export num_proc=2
export prefix=~/qlat-build/default
./scripts/qmp.sh
./scripts/qio.sh
./scripts/cps.sh
- name: Build Grid-clehner
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/grid-clehner.gen16.sh
- name: Build GPT
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/gpt.sh
- name: Install Qlattice
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-packages.sh
- name: Testing pylib qlat
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-py.sh
- name: Testing pylib qlat cps
run: |
export num_proc=3
export prefix=~/qlat-build/default
# ./scripts/qlat-examples-py-cps.sh
- name: Testing qlat
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp.sh
- name: Testing qlat grid
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-cpp-grid.sh
- name: Testing pylib qlat gpt
run: |
export num_proc=3
export prefix=~/qlat-build/default
./scripts/qlat-examples-py-gpt.sh
- name: Check log diff
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-diff-new-logs.sh
- name: Update log
run: |
export prefix=~/qlat-build/default
./scripts/qlat-examples-update-logs.sh
- name: Check error
run: |
! git diff | grep '^[+-]CHECK: ' # || echo "Check failed!"