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ComBat-met added #62

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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@
.Rhistory
.RData
.Ruserdata
.DS_Store
src/*.o
src/*.so
src/*.dll
13 changes: 9 additions & 4 deletions DESCRIPTION
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Expand Up @@ -5,7 +5,8 @@ Author: Jeffrey T. Leek <jtleek@gmail.com>, W. Evan Johnson <wej@bu.edu>,
Hilary S. Parker <hiparker@jhsph.edu>, Elana J. Fertig <ejfertig@jhmi.edu>,
Andrew E. Jaffe <ajaffe@jhsph.edu>, Yuqing Zhang <zhangyuqing.pkusms@gmail.com>,
John D. Storey <jstorey@princeton.edu>,
Leonardo Collado Torres <lcolladotor@gmail.com>
Leonardo Collado Torres <lcolladotor@gmail.com>,
Junmin Wang <jmwang.bio@gmail.com>
Description: The sva package contains functions for removing batch
effects and other unwanted variation in high-throughput
experiment. Specifically, the sva package contains functions
Expand Down Expand Up @@ -39,14 +40,18 @@ Imports:
graphics,
utils,
limma,
edgeR
edgeR,
betareg,
aod,
updog
Suggests:
pamr,
bladderbatch,
BiocStyle,
zebrafishRNASeq,
testthat
testthat,
methylKit
License: Artistic-2.0
biocViews: ImmunoOncology, Microarray, StatisticalMethod, Preprocessing,
MultipleComparison, Sequencing, RNASeq, BatchEffect, Normalization
RoxygenNote: 7.0.2
RoxygenNote: 7.3.1
3 changes: 3 additions & 0 deletions NAMESPACE
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@@ -1,7 +1,10 @@
# Generated by roxygen2: do not edit by hand

export(ComBat)
export(ComBat_biseq)
export(ComBat_met)
export(ComBat_seq)
export(Mvalue_ComBat)
export(empirical.controls)
export(f.pvalue)
export(fstats)
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