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Added details for --analysis-mode
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provided information for pangolin 4 `--analysis-mode` option
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rdeborja authored Sep 1, 2022
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Expand Up @@ -239,6 +239,13 @@ pangolin_version: "3"
```
Note that the specific version is not required, only if it is "3" or "4".

Support for option `--analysis-mode` for `pangolin 4` has been provided as of `ncov-tools`
version 1.9.1. The `config.yaml` file should contain the following entry:
```
pango_analysis_mode: "accurate"
```
The available options are: `accurate (default)` and `fast`. See the `pangolin`
[documentation](https://cov-lineages.org/resources/pangolin/usage.html) for further details.

## Credit and Acknowledgements

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