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New build instructions
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Roman Joeres authored and Roman Joeres committed Jun 20, 2024
1 parent a4709f4 commit 0bc7047
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15 changes: 15 additions & 0 deletions MANIFEST.in
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# By default, all files are excluded
# Include all source
graft datasail

# Include the files for the build process
include setup.py
include recipe/meta.yaml
include recipe_lite/meta.yaml
include base_recipe.yaml

# Include housekeeping files
include README.md
include LICENSE
include CONTRIBUTING.md

5 changes: 4 additions & 1 deletion base_recipe.yaml
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Expand Up @@ -4,6 +4,9 @@ package:

source:
path: ..
# - ../datasail/*
# - ../datasail/args/*.yaml
# - setup.py

build:
entry_points:
Expand Down Expand Up @@ -44,4 +47,4 @@ about:
home: https://github.com/kalininalab/DataSAIL
license: MIT
license_file: LICENSE
summary: DataSAIL is a tool to split datasets while reducing information leakage.
summary: DataSAIL is a tool to split datasets while reducing information leakage.
7 changes: 4 additions & 3 deletions setup.py
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Expand Up @@ -24,9 +24,10 @@
"Natural Language :: English",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
packages=find_packages(),
include_package_data=False,
package_data={"datasail": ["datasail/args/*"]},
packages=["datasail"],
include_package_data=True,
# packages=find_packages(),
# include_package_data=False,
install_requires=[],
python_requires=">=3.8, <4.0.0",
keywords="bioinformatics",
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37 changes: 37 additions & 0 deletions tests/data/pipeline/prot_strat.tsv
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# 1 "prot_weights.tsv"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "prot_weights.tsv"
Target_ID weight
5CO1_A 1
4OLI_A 0
3ZON_A 1
3WOV_A 0
5TKD_A 1
7AX4_A 0
6NZR_A 1
4L00_A 0
4L01_A 1
6B3J_R 0
7RTB_R 1
7FIM_R 0
7X8R_R 1
7DUQ_R 0
6VCB_R 1
5NX2_A 0
7S15_R 1
6LN2_A 0
5VAI_R 1
1XO7_A 0
4S1E_A 1
2HAQ_A 0
4S1J_A 1
6L2B_A 0
3BT8_A 1
8CU5_A 0
4FRV_A 1
4FRU_A 0
1CYN_A 1

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