reduce smoothing in mask_from_voxelquality

korbinian90 · Jan 25, 2022 · 3098597 · 3098597 · korbinian90 · Jan 25, 2022
1 parent 218c6b0
commit 3098597
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "MriResearchTools"
 uuid = "557dad86-b9bd-4533-8525-1a39684d020f"
 authors = ["Korbinian Eckstein"]
-version = "0.6.0"
+version = "0.6.1"
 
 [deps]
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"

diff --git a/src/romeofunctions.jl b/src/romeofunctions.jl
@@ -5,7 +5,7 @@ function mask_from_voxelquality(qmap, threshold)
     qmap_bin = qmap .> threshold # NaN defaults to false (0)
     max_hole_size = length(qmap) / 20
     qmap_bin = .!imfill(.!qmap_bin, (1, max_hole_size)) # fills all holes up to max_hole_size (uses 6 connectivity as default)
-    return gaussiansmooth3d(qmap_bin; padding=true) .> 0.8 # hardcoded final threshold
+    return gaussiansmooth3d(qmap_bin, (1,1,1)) .> 0.8 # hardcoded final threshold
 end
 
 function ROMEO.calculateweights(phase::AbstractArray{T,4}; TEs, template=2, p2ref=1, keyargs...) where T