Updates for Sunday

.gitignore

@@ -42,3 +42,4 @@ vignettes/*.pdf
 .config
 .local
 nohup.out
+*.html

build_local.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+PWD=$(pwd)
+repo=${PWD##*/}
+dockerspace=larsvilhuber
+
+case $USER in
+  vilhuber|larsvilhuber)
+  WORKSPACE=$PWD
+  ;;
+  codespace)
+  WORKSPACE=/workspaces
+  ;;
+esac
+
+# build the docker if necessary
+
+
+docker pull $dockerspace/$repo 
+
+docker run   -v $WORKSPACE:/project -w /project --rm $dockerspace/$repo ./_build.sh

coffee.md

@@ -0,0 +1,5 @@
+# Break {.flexbox .vcenter}
+
+<img src="images/coffeecup.png" style="width: 700px; float: right; margin: 10px;" />[^creditcoffee]
+
+[^creditcoffee]: Coffee Cup Silhouette, by GDJ, <https://openclipart.org/detail/231334/coffee-cup-silhouette>

index.Rmd

@@ -13,6 +13,17 @@ output:
 ```{r, child=c('toc.md')}
 ```
 
+
+# Before we start
+
+## Survey!
+
+<img src="images/aeaintern-400.png" style="width: 400px; float: right; margin: 10px;"/>
+
+[https://tinyurl.com/aeaintern](https://tinyurl.com/aeaintern)
+
+# Overview
+
 ## Overview   {.columns-2}
 
 
@@ -64,14 +75,6 @@ output:
 
 
 
-# Before we start
-
-## Survey!
-
-<img src="images/aeaintern-400.png" style="width: 400px; float: right; margin: 10px;"/>
-
-[https://tinyurl.com/aeaintern](https://tinyurl.com/aeaintern)
-
 
 ## Code of Conduct {.smaller}
 

part1b.Rmd

@@ -240,6 +240,10 @@ You will need to find the information.
 
 After lunch, we will talk about the report you will prepare.
 
+```{r, child=c('coffee.md')}
+```
+
+
 # Data Citations
 
 [Next](part2.html)

style.css

@@ -48,5 +48,10 @@ background-color:#c0cbf87d;
 #author {
       background-color: rgba(0, 0, 255, 0.24);
     }
+
 
+
+.reveal .slides{
+    width: 90% !important;  /* or other width */
+}
 /* end of customizations */

toc.md

@@ -6,9 +6,11 @@
 |  8:00 | Breakfast  |
 |  9:00 |  **Introduction**      |
 | 10:00 |  **[Reproducible practices](part1a.html)**, **[A template README](part1b.html)**        |
+| 10:50 | Coffee break | 
 | 11:00 | **[Data provenance, data citations](part2.html)**  |
 | 12:00 |  Lunch Break                                               |
 | 13:00 |  **What will you be doing in the Lab**                    |
+| 13:30 | [Tech break](https://labordynamicsinstitute.github.io/ldilab-manual/91-setup-checklist.html) |
 | 14:00 |  **[Command line/Git/Markdown/Version control](part4.html)**                      |
 | 15:00 |  **[A prototypical replication report](https://labordynamicsinstitute.github.io/ldilab-manual/08-details-replication-report.html)**                         |
 | 16:00 | **[A walkthrough of the workflow](https://labordynamicsinstitute.github.io/ldilab-manual/11-00-jira-workflow.html)**|